PlantPromoterDB promoter information of AT2G36880.2

Summary of Gene (AT2G36880.2)

Organism	Arabidopsis thaliana
Chromosome	2
Locus	AT2G36880 TAIR NCBI
Gene model	AT2G36880.2
Description	methionine adenosyltransferase 3 (MAT3); FUNCTIONS IN: copper ion binding, methionine adenosyltransferase activity; INVOLVED IN: one-carbon compound metabolic process, S-adenosylmethionine biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133); BEST Arabidopsis thaliana protein match is: MTO3 (METHIONINE OVER-ACCUMULATOR 3); methionine adenosyltransferase (TAIR:AT3G17390.1); Has 8009 Blast hits to 8008 proteins in 1637 species: Archae - 6; Bacteria - 2990; Metazoa - 309; Fungi - 109; Plants - 502; Viruses - 0; Other Eukaryotes - 4093 (source: NCBI BLink).

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Overview

Focused view (chromosome 2: 15481893-15480694)

`Genome position from initiation codon` `AT2G36880.1 AT2G36881.1 TSS from cDNA TSS information AT2G36880.2 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT2G36880.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 95 - 15481402 -509

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	95	-	15481402	-509

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 15481407 -514

TSS clone G clone - 15481404 -511

TSS clone A clone - 15481403 -510

TSS clone G clone - 15481402 -509

TSS clone C clone - 15481401 -508

TSS clone G clone - 15481400 -507

TSS clone G clone - 15481399 -506

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	15481407	-514
TSS clone	`G`	clone	-	15481404	-511
TSS clone	`A`	clone	-	15481403	-510
TSS clone	`G`	clone	-	15481402	-509
TSS clone	`C`	clone	-	15481401	-508
TSS clone	`G`	clone	-	15481400	-507
TSS clone	`G`	clone	-	15481399	-506

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box CAATATAAACC - 15481429 15481439 -536 -546

Y Patch CTCCTCCT - 15481711 15481718 -818 -825

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`CAATATAAACC`	-	15481429	15481439	-536	-546
Y Patch	`CTCCTCCT`	-	15481711	15481718	-818	-825
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AACACGTGA - 15481455 15481463 -562 -570

AtREG590 AACACGTG ABA, JA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG628 ACACGTGA DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

REG CAACGGTC - 15481493 15481500 -600 -607

AtREG553 CAACGGTC Auxin PPDB Motif CCAACGG PLACE Motif YAACKG, CNGTTR

REG CCGGGTCGGGT - 15481617 15481627 -724 -734

AtREG494 CCGGGTCG    PPDB Motif PLACE Motif

AtREG375 CGGGTCGG   PPDB Motif CCGAC PLACE Motif CCGAC

AtREG442   GGGTCGGG PPDB Motif CCGAC PLACE Motif CCGAC

AtREG405    GGTCGGGT PPDB Motif CCGAC PLACE Motif CCGAC

REG TAATTACG - 15481638 15481645 -745 -752

AtREG646 TAATTACG ABA PPDB Motif PLACE Motif

REG ATCCGGTTCGG - 15481662 15481672 -769 -779

AtREG561 ATCCGGTT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG579 TCCGGTTC   PPDB Motif AACCG(G/A) PLACE Motif

AtREG423   CCGGTTCG PPDB Motif AACCG(G/A) PLACE Motif

AtREG456    CGGTTCGG PPDB Motif AACCG(G/A) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AACACGTGA`		-	15481455	15481463	-562	-570
	AtREG590	`AACACGTG`	ABA, JA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG628	`ACACGTGA`	DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
REG	`CAACGGTC`		-	15481493	15481500	-600	-607
	AtREG553	`CAACGGTC`	Auxin	PPDB Motif	`CCAACGG`	PLACE Motif	`YAACKG, CNGTTR`
REG	`CCGGGTCGGGT`		-	15481617	15481627	-724	-734
	AtREG494	`CCGGGTCG`		PPDB Motif		PLACE Motif
	AtREG375	`CGGGTCGG`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG442	`GGGTCGGG`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG405	`GGTCGGGT`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
REG	`TAATTACG`		-	15481638	15481645	-745	-752
	AtREG646	`TAATTACG`	ABA	PPDB Motif		PLACE Motif
REG	`ATCCGGTTCGG`		-	15481662	15481672	-769	-779
	AtREG561	`ATCCGGTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG579	`TCCGGTTC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG423	`CCGGTTCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG456	`CGGTTCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None