PlantPromoterDB promoter information of AT2G36881.1
Summary of Gene (AT2G36881.1)
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Overview
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Focused view (chromosome 2: 15482703-15481504)
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Genome position
from initiation codon AT2G36885.2 TSS from cDNA TSS information AT2G36881.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G36881.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCCTCCT | - | 15481711 | 15481718 | -8 | -15 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CCGGGTCGGGT | - | 15481617 | 15481627 | AT2G36880.1, AT2G36880.2 | ||||
| AtREG494 | CCGGGTCG | PPDB Motif | PLACE Motif | ||||||
| AtREG375 | CGGGTCGG | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| AtREG442 | GGGTCGGG | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| AtREG405 | GGTCGGGT | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| REG | TAATTACG | - | 15481638 | 15481645 | AT2G36880.1, AT2G36880.2 | ||||
| AtREG646 | TAATTACG | ABA | PPDB Motif | PLACE Motif | |||||
| REG | ATCCGGTTCGG | - | 15481662 | 15481672 | AT2G36880.1, AT2G36880.2 | ||||
| AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG579 | TCCGGTTC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG423 | CCGGTTCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG456 | CGGTTCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||