PlantPromoterDB promoter information of AT2G36890.1

Summary of Gene (AT2G36890.1)

Organism	Arabidopsis thaliana
Chromosome	2
Locus	AT2G36890 TAIR NCBI
Gene model	AT2G36890.1
Description	"Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB38, regulates axillary meristem formation. "

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Overview

Focused view (chromosome 2: 15480771-15481970)

`Genome position from initiation codon` `TSS from cDNA TSS information AT2G36890.1 5'->3' (+) Promoter sequence AT2G36880.1 AT2G36880.2 AT2G36881.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT2G36890.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 5 + 15485719 -102

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	5	+	15485719	-102

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CCTTCTTCTCTTTC + 15485747 15485760 -74 -61

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CCTTCTTCTCTTTC`	+	15485747	15485760	-74	-61
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 95 - 15481402 AT2G36880.1, AT2G36880.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	95	-	15481402	AT2G36880.1, AT2G36880.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone - 15481407 AT2G36880.1, AT2G36880.2

TSS clone G clone - 15481404 AT2G36880.1, AT2G36880.2

TSS clone A clone - 15481403 AT2G36880.1, AT2G36880.2

TSS clone G clone - 15481402 AT2G36880.1, AT2G36880.2

TSS clone C clone - 15481401 AT2G36880.1, AT2G36880.2

TSS clone G clone - 15481400 AT2G36880.1, AT2G36880.2

TSS clone G clone - 15481399 AT2G36880.1, AT2G36880.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	-	15481407	AT2G36880.1, AT2G36880.2
TSS clone	`G`	clone	-	15481404	AT2G36880.1, AT2G36880.2
TSS clone	`A`	clone	-	15481403	AT2G36880.1, AT2G36880.2
TSS clone	`G`	clone	-	15481402	AT2G36880.1, AT2G36880.2
TSS clone	`C`	clone	-	15481401	AT2G36880.1, AT2G36880.2
TSS clone	`G`	clone	-	15481400	AT2G36880.1, AT2G36880.2
TSS clone	`G`	clone	-	15481399	AT2G36880.1, AT2G36880.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box CAATATAAACC - 15481429 15481439 AT2G36880.1, AT2G36880.2

Y Patch CTCCTCCT - 15481711 15481718 AT2G36880.1, AT2G36880.2, AT2G36881.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`CAATATAAACC`	-	15481429	15481439	AT2G36880.1, AT2G36880.2
Y Patch	`CTCCTCCT`	-	15481711	15481718	AT2G36880.1, AT2G36880.2, AT2G36881.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG AACACGTGA - 15481455 15481463 AT2G36880.1, AT2G36880.2

AtREG590 AACACGTG ABA, JA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG628 ACACGTGA DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

REG CAACGGTC - 15481493 15481500 AT2G36880.1, AT2G36880.2

AtREG553 CAACGGTC Auxin PPDB Motif CCAACGG PLACE Motif YAACKG, CNGTTR

REG CCGGGTCGGGT - 15481617 15481627 AT2G36880.1, AT2G36880.2

AtREG494 CCGGGTCG    PPDB Motif PLACE Motif

AtREG375 CGGGTCGG   PPDB Motif CCGAC PLACE Motif CCGAC

AtREG442   GGGTCGGG PPDB Motif CCGAC PLACE Motif CCGAC

AtREG405    GGTCGGGT PPDB Motif CCGAC PLACE Motif CCGAC

REG TAATTACG - 15481638 15481645 AT2G36880.1, AT2G36880.2

AtREG646 TAATTACG ABA PPDB Motif PLACE Motif

REG ATCCGGTTCGG - 15481662 15481672 AT2G36880.1, AT2G36880.2

AtREG561 ATCCGGTT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG579 TCCGGTTC   PPDB Motif AACCG(G/A) PLACE Motif

AtREG423   CCGGTTCG PPDB Motif AACCG(G/A) PLACE Motif

AtREG456    CGGTTCGG PPDB Motif AACCG(G/A) PLACE Motif