PlantPromoterDB promoter information of AT2G37190

Summary of Gene (AT2G37190)

Organism	Arabidopsis thaliana
Chromosome	2
Locus	AT2G37190 TAIR NCBI
Gene model	AT2G37190
Description	60S ribosomal protein L12 (RPL12A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to cold, ribosome biogenesis; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L11 (InterPro:IPR000911); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L12 (RPL12B) (TAIR:AT3G53430.1); Has 1152 Blast hits to 1152 proteins in 433 species: Archae - 208; Bacteria - 278; Metazoa - 292; Fungi - 109; Plants - 81; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).

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Overview

Focused view (chromosome 2: 15621059-15619860)

`Genome position from initiation codon` `AT2G37190.1 TSS from cDNA TSS information AT2G37190 5'->3' (-) Promoter sequence AT2G37195.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT2G37190

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak C 13 - 15620110 -51

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`C`	13	-	15620110	-51

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone C clone - 15620114 -55

TSS clone T clone - 15620112 -53

TSS clone C clone - 15620110 -51

TSS clone T clone - 15620109 -50

TSS clone C clone - 15620108 -49

TSS clone G clone - 15620107 -48

TSS clone T clone - 15620106 -47

TSS clone G clone - 15620101 -42

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`C`	clone	-	15620114	-55
TSS clone	`T`	clone	-	15620112	-53
TSS clone	`C`	clone	-	15620110	-51
TSS clone	`T`	clone	-	15620109	-50
TSS clone	`C`	clone	-	15620108	-49
TSS clone	`G`	clone	-	15620107	-48
TSS clone	`T`	clone	-	15620106	-47
TSS clone	`G`	clone	-	15620101	-42

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCTTCTTC - 15620120 15620128 -61 -69

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCTTCTTC`	-	15620120	15620128	-61	-69
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GAAGCCCATAAGGGTA - 15620188 15620203 -129 -144

AtREG476 GAAGCCCA         PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378 AAGCCCAT        PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG477   AGCCCATA       PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG394    GCCCATAA      PPDB Motif GCCCA PLACE Motif

AtREG570         TAAGGGTA PPDB Motif ACCCT PLACE Motif

REG CAAAGCCCATA - 15620211 15620221 -152 -162

AtREG559 CAAAGCCC    PPDB Motif GCCCA PLACE Motif

AtREG376 AAAGCCCA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378   AAGCCCAT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG477    AGCCCATA PPDB Motif GCCCA PLACE Motif TGGGCY

REG GTAAACCGAAC - 15620257 15620267 -198 -208

AtREG519 GTAAACCG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG514 TAAACCGA   PPDB Motif AACCG(G/A) PLACE Motif

AtREG568   AAACCGAA PPDB Motif AACCG(G/A) PLACE Motif

AtREG556    AACCGAAC PPDB Motif AACCG(G/A) PLACE Motif

REG CGGTTCAACTAAACCGGA - 15620278 15620295 -219 -236

AtREG640 CGGTTCAA           PPDB Motif AACCG(G/A) PLACE Motif

AtREG511         CTAAACCG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG412          TAAACCGG PPDB Motif AACCG(G/A) PLACE Motif

AtREG521           AAACCGGA PPDB Motif AACCG(G/A) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GAAGCCCATAAGGGTA`		-	15620188	15620203	-129	-144
	AtREG476	`GAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG378	`AAGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG477	`AGCCCATA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG394	`GCCCATAA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG570	`TAAGGGTA`		PPDB Motif	`ACCCT`	PLACE Motif
REG	`CAAAGCCCATA`		-	15620211	15620221	-152	-162
	AtREG559	`CAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG378	`AAGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG477	`AGCCCATA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
REG	`GTAAACCGAAC`		-	15620257	15620267	-198	-208
	AtREG519	`GTAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG514	`TAAACCGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG568	`AAACCGAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG556	`AACCGAAC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`CGGTTCAACTAAACCGGA`		-	15620278	15620295	-219	-236
	AtREG640	`CGGTTCAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG511	`CTAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG412	`TAAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG521	`AAACCGGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak A clone + 15620349 AT2G37195.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`A`	clone	+	15620349	AT2G37195.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None