PlantPromoterDB promoter information of AT2G37270
Summary of Gene (AT2G37270)
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Overview
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Focused view (chromosome 2: 15650042-15648843)
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Genome position
from initiation codon AT2G37270.2 TSS from cDNA TSS information AT2G37270 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G37270
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 146 | - | 15649218 | -176 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 15649218 | -176 |
| TSS clone | G | clone | - | 15649217 | -175 |
| TSS clone | T | clone | - | 15649210 | -168 |
| TSS clone | T | clone | - | 15649203 | -161 |
| TSS clone | C | clone | - | 15649200 | -158 |
| TSS clone | A | clone | - | 15649196 | -154 |
| TSS clone | T | clone | - | 15649189 | -147 |
| TSS clone | A | clone | - | 15649171 | -129 |
| TSS clone | C | clone | - | 15649150 | -108 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTTATAAACA | - | 15649242 | 15649251 | -200 | -209 |
| Y Patch | CTTCCTTCTCTTCTTCTTCTTC | - | 15649173 | 15649194 | -131 | -152 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAAGCCCAACATAAGCCCAATAA | - | 15649259 | 15649282 | -217 | -240 | |||
| AtREG409 | AAAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG376 | AAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG407 | AAGCCCAA AAGCCCAA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG574 | AGCCCAAC | PPDB Motif | GCCCA, CCAACGG | PLACE Motif | TGGGCY | ||||
| AtREG543 | GCCCAACA | PPDB Motif | GCCCA | PLACE Motif | CAACA | ||||
| AtREG462 | ATAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG426 | TAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG402 | AGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG355 | GCCCAATA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG417 | CCCAATAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CCCAATAG | - | 15649329 | 15649336 | -287 | -294 | |||
| AtREG624 | CCCAATAG | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||