PlantPromoterDB promoter information of AT2G37550.2
Summary of Gene (AT2G37550.2)
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Overview
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Focused view (chromosome 2: 15758456-15757257)
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Genome position
from initiation codon AT2G37555.1 TSS from cDNA TSS information AT2G37550.2 5'->3' (-) Promoter sequence AT2G37555
AT2G37555.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G37550.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 28 | - | 15757519 | -63 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 15757533 | -77 |
| TSS clone | C | clone | - | 15757518 | -62 |
| TSS clone | A | clone | - | 15757517 | -61 |
| TSS clone | T | clone | - | 15757516 | -60 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CACGTGACA | - | 15757585 | 15757593 | -129 | -137 | |||
| AtREG583 | CACGTGAC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | ||||
| AtREG606 | ACGTGACA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | CAAAGCCCAT | - | 15757650 | 15757659 | -194 | -203 | |||
| AtREG559 | CAAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG376 | AAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG378 | AAGCCCAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | CCCGGCCC | - | 15757674 | 15757681 | -218 | -225 | |||
| AtREG404 | CCCGGCCC | CK | PPDB Motif | GCCCA | PLACE Motif | GGGCC | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||