Summary of Gene (AT2G38400)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT2G38400 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 16083689 | -90 |
TSS clone | A | clone | + | 16083691 | -88 |
TSS clone peak | C | clone | + | 16083692 | -87 |
TSS clone | T | clone | + | 16083695 | -84 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGTTGGAT | + | 16083322 | 16083329 | -457 | -450 | |||
AtREG586 | CGTTGGAT | PPDB Motif | CCAACGG  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 26 | + | 16079683 | AT2G38390.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 16079681 | AT2G38390.1 |
TSS clone | C | clone | + | 16079682 | AT2G38390.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCTCTATATAGT | + | 16079643 | 16079654 | AT2G38390.1 | |
Y Patch | TTCCTTCT | + | 16079656 | 16079663 | AT2G38390.1 | |
Y Patch | CTCCCTCC | + | 16079711 | 16079718 | AT2G38390.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |