Summary of Gene (AT2G38560.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT2G38560.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 17 | + | 16134639 | -163 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 16134639 | -163 |
TSS clone | T | clone | + | 16134640 | -162 |
TSS clone | A | clone | + | 16134641 | -161 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TATAAAAT | + | 16134607 | 16134614 | -195 | -188 |
Y Patch | TCTTCTTC | + | 16134653 | 16134660 | -149 | -142 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTCGTTTA | + | 16134368 | 16134375 | -434 | -427 | |||
AtREG565 | GTCGTTTA | PPDB Motif |   | PLACE Motif |   | ||||
REG | AAAAGCCCATCA | + | 16134422 | 16134433 | -380 | -369 | |||
AtREG409 | AAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | AAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG635 | GCCCATCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TTGGCCCAATAAGGGCCTGG | + | 16134438 | 16134457 | -364 | -345 | |||
AtREG484 | TTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG420 | TGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG352 | GGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG355 | GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG417 | CCCAATAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG611 | CCAATAAG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG616 | ATAAGGGC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG619 | GGGCCTGG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | TGAGCCCAA | + | 16134459 | 16134467 | -343 | -335 | |||
AtREG485 | TGAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG533 | GAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | AGCCACGTG | + | 16134538 | 16134546 | -264 | -256 | |||
AtREG450 | AGCCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG367 | GCCACGTG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC  | |||
REG | CCAAACCG | + | 16134549 | 16134556 | -253 | -246 | |||
AtREG550 | CCAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |