PlantPromoterDB promoter information of AT2G38740.1

Summary of Gene (AT2G38740.1)

Organism	Arabidopsis thaliana
Chromosome	2
Locus	AT2G38740 TAIR NCBI
Gene model	AT2G38740.1
Description	haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G56500.1); Has 10291 Blast hits to 10291 proteins in 1397 species: Archae - 137; Bacteria - 7267; Metazoa - 142; Fungi - 274; Plants - 203; Viruses - 3; Other Eukaryotes - 2265 (source: NCBI BLink).

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Overview

Focused view (chromosome 2: 16196995-16195796)

`Genome position from initiation codon` `AT2G38750.1 TSS from cDNA TSS information AT2G38740.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT2G38740.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak T 4 - 16196955 -960

TSS peak G 4 - 16196617 -622

TSS peak G 5 - 16196113 -118

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`T`	4	-	16196955	-960
TSS peak	`G`	4	-	16196617	-622
TSS peak	`G`	5	-	16196113	-118

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone - 16196916 -921

TSS clone G clone - 16196112 -117

TSS clone A clone - 16196091 -96

TSS clone C clone - 16196077 -82

TSS clone A clone - 16196030 -35

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	-	16196916	-921
TSS clone	`G`	clone	-	16196112	-117
TSS clone	`A`	clone	-	16196091	-96
TSS clone	`C`	clone	-	16196077	-82
TSS clone	`A`	clone	-	16196030	-35

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCTCTCT - 16196074 16196081 -79 -86

Y Patch TCTTCCTCT - 16196150 16196158 -155 -163

Y Patch CTTCTCTCC - 16196594 16196602 -599 -607

Y Patch TCTTCTCTTCTC - 16196934 16196945 -939 -950

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCTCTCT`	-	16196074	16196081	-79	-86
Y Patch	`TCTTCCTCT`	-	16196150	16196158	-155	-163
Y Patch	`CTTCTCTCC`	-	16196594	16196602	-599	-607
Y Patch	`TCTTCTCTTCTC`	-	16196934	16196945	-939	-950
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GTGACACGTGGCGA - 16196174 16196187 -179 -192

AtREG498 GTGACACG       ABA PPDB Motif PLACE Motif

AtREG389 TGACACGT      ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG366   GACACGTG     ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

AtREG382    ACACGTGG    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG367     CACGTGGC   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC

AtREG371      ACGTGGCG ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG471       CGTGGCGA ABA PPDB Motif PLACE Motif GCCAC

REG TTCCGGTTTG - 16196207 16196216 -212 -221

AtREG534 TTCCGGTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG521 TCCGGTTT PPDB Motif AACCG(G/A) PLACE Motif

AtREG496   CCGGTTTG PPDB Motif AACCG(G/A) PLACE Motif

REG CTAAACCGGT - 16196231 16196240 -236 -245

AtREG511 CTAAACCG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG412 TAAACCGG PPDB Motif AACCG(G/A) PLACE Motif

AtREG436   AAACCGGT PPDB Motif AACCG(G/A) PLACE Motif

REG CTAAACCGAA - 16196271 16196280 -276 -285

AtREG511 CTAAACCG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG514 TAAACCGA PPDB Motif AACCG(G/A) PLACE Motif

AtREG568   AAACCGAA PPDB Motif AACCG(G/A) PLACE Motif

REG CAAACCGG - 16196903 16196910 -908 -915

AtREG496 CAAACCGG PPDB Motif AACCG(G/A) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GTGACACGTGGCGA`		-	16196174	16196187	-179	-192
	AtREG498	`GTGACACG`	ABA	PPDB Motif		PLACE Motif
	AtREG389	`TGACACGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`
	AtREG366	`GACACGTG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC`
	AtREG382	`ACACGTGG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG367	`CACGTGGC`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC`
	AtREG371	`ACGTGGCG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, GCCAC, ACGTGKC`
	AtREG471	`CGTGGCGA`	ABA	PPDB Motif		PLACE Motif	`GCCAC`
REG	`TTCCGGTTTG`		-	16196207	16196216	-212	-221
	AtREG534	`TTCCGGTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG521	`TCCGGTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG496	`CCGGTTTG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`CTAAACCGGT`		-	16196231	16196240	-236	-245
	AtREG511	`CTAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG412	`TAAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG436	`AAACCGGT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`CTAAACCGAA`		-	16196271	16196280	-276	-285
	AtREG511	`CTAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG514	`TAAACCGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG568	`AAACCGAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`CAAACCGG`		-	16196903	16196910	-908	-915
	AtREG496	`CAAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None