Summary of Gene (AT2G38870.1)
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Overview |
Genome position
from initiation codon AT2G38860.2 AT2G38860.3 TSS from cDNA TSS information AT2G38870.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 10 | - | 16237099 | -49 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 16237098 | -48 |
TSS clone | A | clone | - | 16237097 | -47 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTCTATAAATG | - | 16237124 | 16237134 | -74 | -84 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACGACACC | - | 16237163 | 16237170 | -113 | -120 | |||
AtREG599 | ACGACACC | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTGACTTT | - | 16237190 | 16237197 | -140 | -147 | |||
AtREG632 | TTGACTTT | PPDB Motif |   | PLACE Motif | TTGAC  | ||||
REG | GGGCTATT | - | 16237219 | 16237226 | -169 | -176 | |||
AtREG584 | GGGCTATT | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | - | 16235234 | AT2G38860.1, AT2G38860.2, AT2G38860.3 |
TSS clone peak | C | clone | - | 16235227 | AT2G38860.1, AT2G38860.2, AT2G38860.3 |
TSS clone | A | clone | - | 16235214 | AT2G38860.1, AT2G38860.2, AT2G38860.3 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |