Summary of Gene (AT2G38880.1)
|
Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT2G38880.1 5'->3' (+) Promoter sequence AT2G38870.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 8 | + | 16238512 | -173 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CATATAAACA | + | 16238474 | 16238483 | -211 | -202 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 10 | - | 16237099 | AT2G38870.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | - | 16237098 | AT2G38870.1 |
TSS clone | A | clone | - | 16237097 | AT2G38870.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTCTATAAATG | - | 16237124 | 16237134 | AT2G38870.1 | |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ACGACACC | - | 16237163 | 16237170 | AT2G38870.1 | ||||
AtREG599 | ACGACACC | PPDB Motif |   | PLACE Motif |   |