PlantPromoterDB promoter information of AT2G38880.1
Summary of Gene (AT2G38880.1)
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Overview
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Focused view (chromosome 2: 16236135-16237334)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G38880.1 5'->3' (+) Promoter sequence AT2G38870.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G38880.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 8 | + | 16238512 | -173 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CATATAAACA | + | 16238474 | 16238483 | -211 | -202 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 10 | - | 16237099 | AT2G38870.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | T | clone | - | 16237098 | AT2G38870.1 |
| TSS clone | A | clone | - | 16237097 | AT2G38870.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTCTATAAATG | - | 16237124 | 16237134 | AT2G38870.1 | |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | ACGACACC | - | 16237163 | 16237170 | AT2G38870.1 | ||||
| AtREG599 | ACGACACC | PPDB Motif | PLACE Motif | ||||||
| REG | TTGACTTT | - | 16237190 | 16237197 | AT2G38870.1 | ||||
| AtREG632 | TTGACTTT | PPDB Motif | PLACE Motif | TTGAC | |||||
| REG | GGGCTATT | - | 16237219 | 16237226 | AT2G38870.1 | ||||
| AtREG584 | GGGCTATT | PPDB Motif | GCCCA | PLACE Motif | |||||