PlantPromoterDB promoter information of AT2G39400

Summary of Gene (AT2G39400)

Organism	Arabidopsis thaliana
Chromosome	2
Locus	AT2G39400 TAIR NCBI
Gene model	AT2G39400
Description	hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT3G55180.1); Has 2812 Blast hits to 2804 proteins in 821 species: Archae - 19; Bacteria - 1742; Metazoa - 126; Fungi - 87; Plants - 318; Viruses - 34; Other Eukaryotes - 486 (source: NCBI BLink).

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Overview

Focused view (chromosome 2: 16451719-16452918)

`Genome position from initiation codon` `AT2G39400.1 TSS from cDNA TSS information AT2G39400 5'->3' (+) Promoter sequence AT2G39390.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT2G39400

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone + 16452643 -76

TSS clone peak C clone + 16452644 -75

TSS clone A clone + 16452652 -67

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	+	16452643	-76
TSS clone peak	`C`	clone	+	16452644	-75
TSS clone	`A`	clone	+	16452652	-67

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 26 - 16451831 AT2G39390.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	26	-	16451831	AT2G39390.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone C clone - 16451835 AT2G39390.1

TSS clone T clone - 16451832 AT2G39390.1

TSS clone G clone - 16451830 AT2G39390.1

TSS clone A clone - 16451814 AT2G39390.1

TSS clone T clone - 16451813 AT2G39390.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`C`	clone	-	16451835	AT2G39390.1
TSS clone	`T`	clone	-	16451832	AT2G39390.1
TSS clone	`G`	clone	-	16451830	AT2G39390.1
TSS clone	`A`	clone	-	16451814	AT2G39390.1
TSS clone	`T`	clone	-	16451813	AT2G39390.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CGTCTTCTTCTTC - 16451842 16451854 AT2G39390.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CGTCTTCTTCTTC`	-	16451842	16451854	AT2G39390.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CAAAGCCCAAAT - 16451886 16451897 AT2G39390.1

AtREG559 CAAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG376 AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG469    AGCCCAAA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG421     GCCCAAAT PPDB Motif GCCCA PLACE Motif

REG TCAGCCCATTAG - 16451925 16451936 AT2G39390.1

AtREG609 TCAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372   AGCCCATT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG357    GCCCATTA PPDB Motif GCCCA PLACE Motif

AtREG558     CCCATTAG PPDB Motif GCCCA PLACE Motif

REG TGGCCCATAA - 16451947 16451956 AT2G39390.1

AtREG490 TGGCCCAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG364 GGCCCATA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG394   GCCCATAA PPDB Motif GCCCA PLACE Motif

REG CGGCGCGTGT - 16452051 16452060 AT2G39390.1

AtREG538 CGGCGCGT   PPDB Motif ACGCGC PLACE Motif

AtREG486 GGCGCGTG PPDB Motif ACGCGC PLACE Motif

AtREG385   GCGCGTGT PPDB Motif ACGCGC PLACE Motif ACACNNG