PlantPromoterDB promoter information of AT2G39730
Summary of Gene (AT2G39730)
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Overview
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Focused view (chromosome 2: 16574345-16573146)
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Genome position
from initiation codon AT2G39730.2 AT2G39730.3 TSS from cDNA TSS information AT2G39730 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G39730
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 262 | - | 16573433 | -88 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 16573533 | -188 |
| TSS clone | G | clone | - | 16573477 | -132 |
| TSS clone | T | clone | - | 16573476 | -131 |
| TSS clone | A | clone | - | 16573433 | -88 |
| TSS clone | A | clone | - | 16573432 | -87 |
| TSS clone | A | clone | - | 16573430 | -85 |
| TSS clone | T | clone | - | 16573429 | -84 |
| TSS clone | T | clone | - | 16573427 | -82 |
| TSS clone | C | clone | - | 16573426 | -81 |
| TSS clone | T | clone | - | 16573425 | -80 |
| TSS clone | A | clone | - | 16573422 | -77 |
| TSS clone | A | clone | - | 16573421 | -76 |
| TSS clone | A | clone | - | 16573404 | -59 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTTTATAAATC | - | 16573455 | 16573465 | -110 | -120 |
| Y Patch | TTCCTCTCTTC | - | 16573388 | 16573398 | -43 | -53 |
| Y Patch | CTTCTTCTTCT | - | 16573409 | 16573419 | -64 | -74 |
| Y Patch | CATCTCTC | - | 16573424 | 16573431 | -79 | -86 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGTGGCAA | - | 16573547 | 16573554 | -202 | -209 | |||
| AtREG452 | CGTGGCAA | PPDB Motif | PLACE Motif | GCCAC | |||||
| REG | TTCCACGTGGAC | - | 16573588 | 16573599 | -243 | -254 | |||
| AtREG627 | TTCCACGT | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| AtREG408 | TCCACGTGGA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | |||
| AtREG513 | ACGTGGAC | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||