PlantPromoterDB promoter information of AT2G40420.1
Summary of Gene (AT2G40420.1)
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Overview
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Focused view (chromosome 2: 16876300-16877499)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G40420.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G40420.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 8 | + | 16877230 | -70 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 16877240 | -60 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTTCTCTC | + | 16877199 | 16877208 | -101 | -92 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TAAATGGG | + | 16876982 | 16876989 | -318 | -311 | |||
| AtREG443 | TAAATGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CCCATTTA | + | 16876994 | 16877001 | -306 | -299 | |||
| AtREG443 | CCCATTTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CCCATTTA | + | 16877045 | 16877052 | -255 | -248 | |||
| AtREG443 | CCCATTTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ATGCCACGTA | + | 16877166 | 16877175 | -134 | -125 | |||
| AtREG448 | ATGCCACG | ABA, DREB1Aox | PPDB Motif | PLACE Motif | GCCAC | ||||
| AtREG379 | TGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG413 | GCCACGTA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| REG | GACGTCGTT | + | 16877181 | 16877189 | -119 | -111 | |||
| AtREG431 | GACGTCGT | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
| AtREG493 | ACGTCGTT | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||