PlantPromoterDB promoter information of AT2G40830.2
Summary of Gene (AT2G40830.2)
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Overview
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Focused view (chromosome 2: 17042642-17043841)
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Genome position
from initiation codon AT2G40830.3 TSS from cDNA TSS information AT2G40830.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G40830.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 5 | + | 17042676 | -966 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 17042675 | -967 |
| TSS clone | G | clone | + | 17042681 | -961 |
| TSS clone | G | clone | + | 17042701 | -941 |
| TSS clone | T | clone | + | 17042705 | -937 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTTCTTCTTC | + | 17042702 | 17042713 | -940 | -929 |
| Y Patch | CCTCTTCTT | + | 17042716 | 17042724 | -926 | -918 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACAGGCCCATCA | + | 17042458 | 17042469 | -1184 | -1173 | |||
| AtREG433 | ACAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG370 | CAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | AGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG403 | GGCCCATC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG635 | GCCCATCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ACAGGCCCATC | + | 17042489 | 17042499 | -1153 | -1143 | |||
| AtREG433 | ACAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG370 | CAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | AGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG403 | GGCCCATC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| REG | CAAGGCCCATAA | + | 17042544 | 17042555 | -1098 | -1087 | |||
| AtREG398 | CAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG353 | AAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | AGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG364 | GGCCCATA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG394 | GCCCATAA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||