Summary of Gene (AT2G40900.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT2G40900.1 5'->3' (-) Promoter sequence AT2G40880.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 36 | - | 17065684 | -170 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 17065684 | -170 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TGCTATATATACA | - | 17065710 | 17065722 | -196 | -208 |
Y Patch | TTTCTCTCCTCTCTTT | - | 17065645 | 17065660 | -131 | -146 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CAAACCGGAA | - | 17065816 | 17065825 | -302 | -311 | |||
AtREG496 | CAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG534 | AACCGGAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 5 | + | 17057446 | AT2G40880.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | G | clone | - | 17057127 | AT2G40860.1 |
TSS clone | A | clone | + | 17057437 | AT2G40880.1 |
TSS clone | T | clone | + | 17057457 | AT2G40880.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AGACACGTGTCAT | + | 17057336 | 17057348 | AT2G40880.1 | ||||
AtREG470 | AGACACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
AtREG366 | GACACGTGTC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC  | |||
AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
AtREG438 | CGTGTCAT | ABA | PPDB Motif |   | PLACE Motif |   |