PlantPromoterDB promoter information of AT2G41430
Summary of Gene (AT2G41430)
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Overview
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Focused view (chromosome 2: 17268736-17269935)
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Genome position
from initiation codon AT2G41430.2 AT2G41430.3 AT2G41430.4 TSS from cDNA TSS information AT2G41430 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G41430
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 36 | + | 17269294 | -442 |
| TSS peak | G | 2 | + | 17269419 | -317 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 17269239 | -497 |
| TSS clone | G | clone | + | 17269287 | -449 |
| TSS clone | C | clone | + | 17269288 | -448 |
| TSS clone | A | clone | + | 17269289 | -447 |
| TSS clone | A | clone | + | 17269290 | -446 |
| TSS clone | G | clone | + | 17269292 | -444 |
| TSS clone | T | clone | + | 17269293 | -443 |
| TSS clone | A | clone | + | 17269294 | -442 |
| TSS clone | G | clone | + | 17269295 | -441 |
| TSS clone | G | clone | + | 17269302 | -434 |
| TSS clone | A | clone | + | 17269305 | -431 |
| TSS clone | A | clone | + | 17269440 | -296 |
| TSS clone | T | clone | + | 17269489 | -247 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTTTATATATT | + | 17269252 | 17269262 | -484 | -474 |
| Y Patch | CCTTCTTCTTCTC | + | 17269266 | 17269278 | -470 | -458 |
| Y Patch | TCTTCTTCTCT | + | 17269420 | 17269430 | -316 | -306 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAGTCAATAAAAGCC | + | 17269103 | 17269118 | -633 | -618 | |||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||
| AtREG549 | TAAAAGCC | PPDB Motif | PLACE Motif | ||||||
| REG | TACACGTGGAC | + | 17269133 | 17269143 | -603 | -593 | |||
| AtREG453 | TACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
| AtREG382 | ACACGTGG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG408 | CACGTGGA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | |||
| AtREG513 | ACGTGGAC | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | ACCGAACC | + | 17269241 | 17269248 | -495 | -488 | |||
| AtREG451 | ACCGAACC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||