PlantPromoterDB promoter information of AT2G41530.1
Summary of Gene (AT2G41530.1)
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Overview
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Focused view (chromosome 2: 17326430-17325231)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G41530.1 5'->3' (-) Promoter sequence AT2G41540.1
AT2G41540.2 AT2G41540.3 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G41530.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 33 | - | 17325494 | -64 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 17325595 | -165 |
| TSS clone | A | clone | - | 17325548 | -118 |
| TSS clone | T | clone | - | 17325484 | -54 |
| TSS clone | G | clone | - | 17325452 | -22 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTTCTTCT | - | 17325477 | 17325484 | -47 | -54 |
| Y Patch | TTTCTTCTTCTTCTTC | - | 17325511 | 17325526 | -81 | -96 |
| Y Patch | CCTCTCTCAT | - | 17325534 | 17325543 | -104 | -113 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TATGGGCT | - | 17325573 | 17325580 | -143 | -150 | |||
| AtREG477 | TATGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | AGTTGGGCCA | - | 17325615 | 17325624 | -185 | -194 | |||
| AtREG607 | AGTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG449 | GTTGGGCC | PPDB Motif | GCCCA, CCAACGG | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG420 | TTGGGCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| REG | ATAAACCGGAT | - | 17325671 | 17325681 | -241 | -251 | |||
| AtREG598 | ATAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG561 | AACCGGAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 8 | + | 17326170 | AT2G41540.1, AT2G41540.2, AT2G41540.3 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | C | clone | + | 17326128 | AT2G41540.1, AT2G41540.2, AT2G41540.3 |
| TSS clone | A | clone | + | 17326159 | AT2G41540.1, AT2G41540.2, AT2G41540.3 |
| TSS clone | T | clone | + | 17326171 | AT2G41540.1, AT2G41540.2, AT2G41540.3 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTTCTTCT | + | 17326147 | 17326156 | AT2G41540.1, AT2G41540.2, AT2G41540.3 | |
| Y Patch | TCTTTCTC | + | 17326192 | 17326199 | AT2G41540.1, AT2G41540.2, AT2G41540.3 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CCGGTATA | + | 17325871 | 17325878 | AT2G41540.1, AT2G41540.2, AT2G41540.3 | ||||
| AtREG629 | CCGGTATA | PPDB Motif | PLACE Motif | ||||||