PlantPromoterDB promoter information of AT2G41740.1
Summary of Gene (AT2G41740.1)
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Overview
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Focused view (chromosome 2: 17417878-17416679)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G41740.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G41740.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 10 | - | 17417578 | -700 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 17417722 | -844 |
| TSS clone | G | clone | - | 17417687 | -809 |
| TSS clone | A | clone | - | 17417583 | -705 |
| TSS clone | A | clone | - | 17417580 | -702 |
| TSS clone | G | clone | - | 17417577 | -699 |
| TSS clone | A | clone | - | 17417551 | -673 |
| TSS clone | G | clone | - | 17417512 | -634 |
| TSS clone | T | clone | - | 17417511 | -633 |
| TSS clone | G | clone | - | 17417499 | -621 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTCTTCTTC | - | 17417529 | 17417539 | -651 | -661 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCCTTAA | - | 17417775 | 17417782 | -897 | -904 | |||
| AtREG416 | GGCCTTAA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||