PlantPromoterDB promoter information of AT2G42500.2
Summary of Gene (AT2G42500.2)
|
Overview
|
Focused view (chromosome 2: 17702226-17701027)
|
Genome position
from initiation codon TSS from cDNA TSS information AT2G42500.2 5'->3' (-) Promoter sequence AT2G42510.1
AT2G42510.2 AT2G42510.3 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT2G42500.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 55 | - | 17701413 | -187 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 17701412 | -186 |
| TSS clone | A | clone | - | 17701404 | -178 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGGGTATT | - | 17701513 | 17701520 | -287 | -294 | |||
| AtREG614 | GGGGTATT | PPDB Motif | ACCCCT | PLACE Motif | |||||
| REG | TTAAACCGGT | - | 17701548 | 17701557 | -322 | -331 | |||
| AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG436 | AAACCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TTAAACCGT | - | 17701569 | 17701577 | -343 | -351 | |||
| AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG652 | TAAACCGT | PPDB Motif | PLACE Motif | ||||||
| REG | AAACCGGTTCA | - | 17701579 | 17701589 | -353 | -363 | |||
| AtREG436 | AAACCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG528 | ACCGGTTC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG480 | CCGGTTCA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||