Summary of Gene (AT2G42840)
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Overview |
Genome position
from initiation codon AT2G42835.1 TSS from cDNA TSS information AT2G42840 5'->3' (-) Promoter sequence AT2G42830.1
AT2G42830.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 456 | - | 17827480 | -54 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 17827483 | -57 |
TSS clone | C | clone | - | 17827482 | -56 |
TSS clone | C | clone | - | 17827477 | -51 |
TSS clone | T | clone | - | 17827469 | -43 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTTATAAACC | - | 17827505 | 17827514 | -79 | -88 |
Y Patch | CTTCTCTCT | - | 17827450 | 17827458 | -24 | -32 |
Y Patch | TCTTTCCTTCCCTCT | - | 17827516 | 17827530 | -90 | -104 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGGGTATTAAATGGG | - | 17827625 | 17827639 | -199 | -213 | |||
AtREG614 | GGGGTATT | PPDB Motif | ACCCCT  | PLACE Motif |   | ||||
AtREG443 | TAAATGGG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |