PlantPromoterDB promoter information of AT2G42840
Summary of Gene (AT2G42840)
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Overview
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Focused view (chromosome 2: 17831626-17830427)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G42840 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G42840
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 456 | - | 17827480 | -54 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 17827483 | -57 |
| TSS clone | C | clone | - | 17827482 | -56 |
| TSS clone | C | clone | - | 17827477 | -51 |
| TSS clone | T | clone | - | 17827469 | -43 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTTATAAACC | - | 17827505 | 17827514 | -79 | -88 |
| Y Patch | CTTCTCTCT | - | 17827450 | 17827458 | -24 | -32 |
| Y Patch | TCTTTCCTTCCCTCT | - | 17827516 | 17827530 | -90 | -104 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGGGTATTAAATGGG | - | 17827625 | 17827639 | -199 | -213 | |||
| AtREG614 | GGGGTATT | PPDB Motif | ACCCCT | PLACE Motif | |||||
| AtREG443 | TAAATGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 8 | + | 17831618 | AT2G42850.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CGTCATTT | + | 17831395 | 17831402 | AT2G42850.1 | ||||
| AtREG657 | CGTCATTT | PPDB Motif | PLACE Motif | ||||||