PlantPromoterDB promoter information of AT2G43330.1
Summary of Gene (AT2G43330.1)
|
Overview
|
Focused view (chromosome 2: 18000135-18001334)
|
Genome position
from initiation codon TSS from cDNA TSS information AT2G43330.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT2G43330.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 4 | + | 18000815 | -320 |
| TSS peak | G | 4 | + | 18000895 | -240 |
| TSS peak | G | 4 | + | 18001092 | -43 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 18000854 | -281 |
| TSS clone | A | clone | + | 18000889 | -246 |
| TSS clone | G | clone | + | 18000895 | -240 |
| TSS clone | G | clone | + | 18000896 | -239 |
| TSS clone | T | clone | + | 18000897 | -238 |
| TSS clone | A | clone | + | 18000901 | -234 |
| TSS clone | T | clone | + | 18000902 | -233 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCTCT | + | 18000834 | 18000841 | -301 | -294 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCACGCGCTT | + | 18000583 | 18000592 | -552 | -543 | |||
| AtREG395 | TCACGCGC | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG381 | CACGCGCT | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG492 | ACGCGCTT | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | TACACGTGTA | + | 18000626 | 18000635 | -509 | -500 | |||
| AtREG453 | TACACGTGTA | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
| REG | TCGCCACGTGTA | + | 18000772 | 18000783 | -363 | -352 | |||
| AtREG471 | TCGCCACG | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
| AtREG371 | CGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG367 | GCCACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | |||
| AtREG382 | CCACGTGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG453 | CACGTGTA | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||