PlantPromoterDB promoter information of AT2G43550
Summary of Gene (AT2G43550)
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Overview
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Focused view (chromosome 2: 18072263-18073462)
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Genome position
from initiation codon AT2G43550.1 TSS from cDNA TSS information AT2G43550 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G43550
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 8 | + | 18072407 | -856 |
| TSS peak | A | 4 | + | 18073234 | -29 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 18072432 | -831 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAATGACG | + | 18072147 | 18072154 | -1116 | -1109 | |||
| AtREG657 | AAATGACG | PPDB Motif | PLACE Motif | ||||||
| REG | ATCCAACGG | + | 18072299 | 18072307 | -964 | -956 | |||
| AtREG586 | ATCCAACG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| AtREG554 | TCCAACGG | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
| REG | GTGACGTGTGA | + | 18072329 | 18072339 | -934 | -924 | |||
| AtREG466 | GTGACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG517 | TGACGTGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG588 | ACGTGTGA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||