PlantPromoterDB promoter information of AT2G44610.1
Summary of Gene (AT2G44610.1)
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Overview
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Focused view (chromosome 2: 18414883-18413684)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G44610.1 5'->3' (-) Promoter sequence AT2G44620.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G44610.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 20 | - | 18414013 | -130 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 18414075 | -192 |
| TSS clone | C | clone | - | 18414012 | -129 |
| TSS clone | A | clone | - | 18413934 | -51 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCTCC | - | 18413970 | 18413978 | -87 | -95 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCCAATTGGG | - | 18414056 | 18414065 | -173 | -182 | |||
| AtREG647 | CCCAATTGGG | PPDB Motif | PLACE Motif | ||||||
| REG | GCCCATAA | - | 18414148 | 18414155 | -265 | -272 | |||
| AtREG394 | GCCCATAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GTGGGCTTAT | - | 18414163 | 18414172 | -280 | -289 | |||
| AtREG518 | GTGGGCTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG426 | TGGGCTTA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG462 | GGGCTTAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | AGCCCAAAT | - | 18414179 | 18414187 | -296 | -304 | |||
| AtREG469 | AGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG421 | GCCCAAAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ATGACACGTG | - | 18414205 | 18414214 | -322 | -331 | |||
| AtREG438 | ATGACACG | ABA | PPDB Motif | PLACE Motif | |||||
| AtREG389 | TGACACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG366 | GACACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 18414228 | AT2G44620.1 |
| TSS clone peak | A | clone | + | 18414279 | AT2G44620.1 |
| TSS clone | C | clone | + | 18414289 | AT2G44620.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||