PlantPromoterDB promoter information of AT2G44640

Summary of Gene (AT2G44640)

Organism	Arabidopsis thaliana
Chromosome	2
Locus	AT2G44640 TAIR NCBI
Gene model	AT2G44640
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plasma membrane, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PDE320 (PIGMENT DEFECTIVE 320) (TAIR:AT3G06960.1); Has 25 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

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Overview

Focused view (chromosome 2: 18416286-18417485)

`Genome position from initiation codon` `AT2G44640.1 TSS from cDNA TSS information AT2G44640 5'->3' (+) Promoter sequence AT2G44630.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT2G44640

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 8 + 18417245 -41

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	8	+	18417245	-41

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone + 18417243 -43

TSS clone C clone + 18417244 -42

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	+	18417243	-43
TSS clone	`C`	clone	+	18417244	-42

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GGGCTTTA + 18417004 18417011 -282 -275

AtREG365 GGGCTTTA PPDB Motif GCCCA PLACE Motif

REG CCGGTTAAA + 18417027 18417035 -259 -251

AtREG501 CCGGTTAA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG645 CGGTTAAA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG CGGTTAAAACCGGTTTAT + 18417059 18417076 -227 -210

AtREG645 CGGTTAAA           PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG542      AAAACCGG      PPDB Motif AACCG(G/A) PLACE Motif

AtREG436       AAACCGGTTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG412          CCGGTTTA PPDB Motif AACCG(G/A) PLACE Motif

AtREG598           CGGTTTAT PPDB Motif AACCG(G/A) PLACE Motif

REG ATAAGGCCCAG + 18417116 18417126 -170 -160

AtREG425 ATAAGGCC    PPDB Motif AACCG(G/A) PLACE Motif

AtREG351 TAAGGCCC   PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353   AAGGCCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG410    AGGCCCAG PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG ATAAGCCC + 18417129 18417136 -157 -150

AtREG462 ATAAGCCC PPDB Motif GCCCA PLACE Motif

REG CAAGGCCCATTAA + 18417172 18417184 -114 -102

AtREG398 CAAGGCCC      PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353 AAGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354   AGGCCCAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG361    GGCCCATT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG357     GCCCATTA PPDB Motif GCCCA PLACE Motif

AtREG396      CCCATTAA PPDB Motif GCCCA PLACE Motif TTAATGG

REG AAAAGGCCCAT + 18417194 18417204 -92 -82

AtREG459 AAAAGGCC    PPDB Motif PLACE Motif

AtREG359 AAAGGCCC   PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353   AAGGCCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354    AGGCCCAT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GGGCTTTA`		+	18417004	18417011	-282	-275
	AtREG365	`GGGCTTTA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`CCGGTTAAA`		+	18417027	18417035	-259	-251
	AtREG501	`CCGGTTAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG645	`CGGTTAAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
REG	`CGGTTAAAACCGGTTTAT`		+	18417059	18417076	-227	-210
	AtREG645	`CGGTTAAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG542	`AAAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG436	`AAACCGGTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG412	`CCGGTTTA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG598	`CGGTTTAT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`ATAAGGCCCAG`		+	18417116	18417126	-170	-160
	AtREG425	`ATAAGGCC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG351	`TAAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG353	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG410	`AGGCCCAG`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`ATAAGCCC`		+	18417129	18417136	-157	-150
	AtREG462	`ATAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`CAAGGCCCATTAA`		+	18417172	18417184	-114	-102
	AtREG398	`CAAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG353	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`AGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG361	`GGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG357	`GCCCATTA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG396	`CCCATTAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TTAATGG`
REG	`AAAAGGCCCAT`		+	18417194	18417204	-92	-82
	AtREG459	`AAAAGGCC`		PPDB Motif		PLACE Motif
	AtREG359	`AAAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG353	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`AGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak A clone - 18416983 AT2G44630.1

TSS clone peak G clone - 18416982 AT2G44630.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`A`	clone	-	18416983	AT2G44630.1
TSS clone peak	`G`	clone	-	18416982	AT2G44630.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None