Summary of Gene (AT2G44790)
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Overview |
Genome position
from initiation codon AT2G44790.1 TSS from cDNA TSS information AT2G44790 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 279 | - | 18463274 | -42 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | - | 18463309 | -77 |
TSS clone | A | clone | - | 18463274 | -42 |
TSS clone | C | clone | - | 18463273 | -41 |
TSS clone | C | clone | - | 18463264 | -32 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTATATAATG | - | 18463299 | 18463308 | -67 | -76 |
Y Patch | TCTCTCTTCT | - | 18463247 | 18463256 | -15 | -24 |
Y Patch | TTTCTTCTCTTC | - | 18463275 | 18463286 | -43 | -54 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATAATGGG | - | 18463563 | 18463570 | -331 | -338 | |||
AtREG546 | ATAATGGG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |