PlantPromoterDB promoter information of AT2G44790
Summary of Gene (AT2G44790)
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Overview
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Focused view (chromosome 2: 18464782-18463583)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G44790 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G44790
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 279 | - | 18463274 | -42 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 18463309 | -77 |
| TSS clone | A | clone | - | 18463274 | -42 |
| TSS clone | C | clone | - | 18463273 | -41 |
| TSS clone | C | clone | - | 18463264 | -32 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTATATAATG | - | 18463299 | 18463308 | -67 | -76 |
| Y Patch | TCTCTCTTCT | - | 18463247 | 18463256 | -15 | -24 |
| Y Patch | TTTCTTCTCTTC | - | 18463275 | 18463286 | -43 | -54 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATAATGGG | - | 18463563 | 18463570 | -331 | -338 | |||
| AtREG546 | ATAATGGG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||