PlantPromoterDB promoter information of AT2G45070.1
Summary of Gene (AT2G45070.1)
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Overview
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Focused view (chromosome 2: 18588456-18587257)
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Genome position
from initiation codon AT2G45070.3 AT2G45070.4 TSS from cDNA TSS information AT2G45070.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G45070.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 166 | - | 18588259 | -803 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 18588291 | -835 |
| TSS clone | G | clone | - | 18588259 | -803 |
| TSS clone | A | clone | - | 18588258 | -802 |
| TSS clone | A | clone | - | 18588257 | -801 |
| TSS clone | A | clone | - | 18588249 | -793 |
| TSS clone | A | clone | - | 18588247 | -791 |
| TSS clone | A | clone | - | 18588141 | -685 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTCCTATAAAAA | - | 18588284 | 18588295 | -828 | -839 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGTGGCGA | - | 18588306 | 18588313 | -850 | -857 | |||
| AtREG471 | CGTGGCGA | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
| REG | TAATTACG | - | 18588355 | 18588362 | -899 | -906 | |||
| AtREG646 | TAATTACG | ABA | PPDB Motif | PLACE Motif | |||||
| REG | ATTTGGGCTTTAA | - | 18588405 | 18588417 | -949 | -961 | |||
| AtREG421 | ATTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG469 | TTTGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG407 | TTGGGCTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG376 | TGGGCTTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG365 | GGGCTTTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG545 | GGCTTTAA | PPDB Motif | PLACE Motif | ||||||
| REG | TCTGGGCCTTAA | - | 18588419 | 18588430 | -963 | -974 | |||
| AtREG397 | TCTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG410 | CTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG353 | TGGGCCTT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG351 | GGGCCTTA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG416 | GGCCTTAA | PPDB Motif | PLACE Motif | ||||||
| REG | ATTTGGGCTTC | - | 18588432 | 18588442 | -976 | -986 | |||
| AtREG421 | ATTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG469 | TTTGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG407 | TTGGGCTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG476 | TGGGCTTC | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||