PlantPromoterDB promoter information of AT2G45470
Summary of Gene (AT2G45470)
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Overview
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Focused view (chromosome 2: 18745059-18743860)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G45470 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G45470
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 23 | - | 18744109 | -50 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 18744111 | -52 |
| TSS clone | C | clone | - | 18744110 | -51 |
| TSS clone | A | clone | - | 18744109 | -50 |
| TSS clone | C | clone | - | 18744108 | -49 |
| TSS clone | T | clone | - | 18744103 | -44 |
| TSS clone | C | clone | - | 18744094 | -35 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTCCTCT | - | 18744101 | 18744108 | -42 | -49 |
| Y Patch | TCTTCTCC | - | 18744110 | 18744117 | -51 | -58 |
| Y Patch | CATCTCTCTTCTC | - | 18744124 | 18744136 | -65 | -77 |
| Y Patch | TCCTTCTCTT | - | 18744144 | 18744153 | -85 | -94 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTTAACCG | - | 18744167 | 18744174 | -108 | -115 | |||
| AtREG645 | TTTAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| REG | GAAGCCCAAAT | - | 18744368 | 18744378 | -309 | -319 | |||
| AtREG476 | GAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG407 | AAGCCCAA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG469 | AGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG421 | GCCCAAAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TTTAGGCC | - | 18744402 | 18744409 | -343 | -350 | |||
| AtREG430 | TTTAGGCC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||