PlantPromoterDB promoter information of AT2G45730.1

Summary of Gene (AT2G45730.1)

Organism	Arabidopsis thaliana
Chromosome	2
Locus	AT2G45730 TAIR NCBI
Gene model	AT2G45730.1
Description	eukaryotic initiation factor 3 gamma subunit family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, regulation of translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic initiation factor 3, gamma subunit (InterPro:IPR007316), tRNA (adenine-N(1)-)-methyltransferase, non-catalytic TRM6 subunit (InterPro:IPR017423); Has 291 Blast hits to 275 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 98; Plants - 21; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).

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Overview

Focused view (chromosome 2: 18840123-18838924)

`Genome position from initiation codon` `TSS from cDNA TSS information AT2G45730.1 5'->3' (-) Promoter sequence AT2G45740.1 AT2G45740.2 AT2G45740.3 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT2G45730.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 4 - 18839152 -29

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	4	-	18839152	-29

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone - 18839145 -22

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	-	18839145	-22

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCTTCTT - 18839130 18839138 -7 -15

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCTTCTT`	-	18839130	18839138	-7	-15
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TTTAACCG - 18839236 18839243 -113 -120

AtREG645 TTTAACCG PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG TTAAACCG - 18839251 18839258 -128 -135

AtREG473 TTAAACCG PPDB Motif AACCG(G/A) PLACE Motif

REG GGCCTTAA - 18839269 18839276 -146 -153

AtREG416 GGCCTTAA PPDB Motif PLACE Motif

REG TAAATGGGCT - 18839285 18839294 -162 -171

AtREG443 TAAATGGG   PPDB Motif GCCCA PLACE Motif

AtREG386 AAATGGGC PPDB Motif GCCCA PLACE Motif

AtREG372   AATGGGCT PPDB Motif GCCCA PLACE Motif TGGGCY

REG TTAAAGCCCAATAA - 18839304 18839317 -181 -194

AtREG545 TTAAAGCC       PPDB Motif PLACE Motif

AtREG365 TAAAGCCC      PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407    AAGCCCAA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402     AGCCCAAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG355      GCCCAATA PPDB Motif GCCCA PLACE Motif

AtREG417       CCCAATAA PPDB Motif GCCCA PLACE Motif

REG TTCCACGTGGAT - 18839348 18839359 -225 -236

AtREG627 TTCCACGT     PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG408 TCCACGTGGA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG547     ACGTGGAT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG ACCACGTGGCAC - 18839386 18839397 -263 -274

AtREG544 ACCACGTG     ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG367   CACGTGGC   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC

AtREG379    ACGTGGCA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG444     CGTGGCAC PPDB Motif PLACE Motif GCCAC

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TTTAACCG`		-	18839236	18839243	-113	-120
	AtREG645	`TTTAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
REG	`TTAAACCG`		-	18839251	18839258	-128	-135
	AtREG473	`TTAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`GGCCTTAA`		-	18839269	18839276	-146	-153
	AtREG416	`GGCCTTAA`		PPDB Motif		PLACE Motif
REG	`TAAATGGGCT`		-	18839285	18839294	-162	-171
	AtREG443	`TAAATGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG386	`AAATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG372	`AATGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
REG	`TTAAAGCCCAATAA`		-	18839304	18839317	-181	-194
	AtREG545	`TTAAAGCC`		PPDB Motif		PLACE Motif
	AtREG365	`TAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`AAGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG402	`AGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG355	`GCCCAATA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG417	`CCCAATAA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`TTCCACGTGGAT`		-	18839348	18839359	-225	-236
	AtREG627	`TTCCACGT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
	AtREG408	`TCCACGTGGA`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG`
	AtREG547	`ACGTGGAT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
REG	`ACCACGTGGCAC`		-	18839386	18839397	-263	-274
	AtREG544	`ACCACGTG`	ABA, DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
	AtREG367	`CACGTGGC`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC`
	AtREG379	`ACGTGGCA`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, GCCAC, ACGTGKC`
	AtREG444	`CGTGGCAC`		PPDB Motif		PLACE Motif	`GCCAC`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 17 + 18839639 AT2G45740.1, AT2G45740.2, AT2G45740.3

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	17	+	18839639	AT2G45740.1, AT2G45740.2, AT2G45740.3

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone C clone + 18839586 AT2G45740.1, AT2G45740.2, AT2G45740.3

TSS clone T clone + 18839588 AT2G45740.1, AT2G45740.2, AT2G45740.3

TSS clone T clone + 18839590 AT2G45740.1, AT2G45740.2, AT2G45740.3

TSS clone T clone + 18839640 AT2G45740.1, AT2G45740.2, AT2G45740.3

TSS clone G clone + 18839642 AT2G45740.1, AT2G45740.2, AT2G45740.3

TSS clone C clone + 18839643 AT2G45740.1, AT2G45740.2, AT2G45740.3

TSS clone G clone + 18839678 AT2G45740.1, AT2G45740.2, AT2G45740.3

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`C`	clone	+	18839586	AT2G45740.1, AT2G45740.2, AT2G45740.3
TSS clone	`T`	clone	+	18839588	AT2G45740.1, AT2G45740.2, AT2G45740.3
TSS clone	`T`	clone	+	18839590	AT2G45740.1, AT2G45740.2, AT2G45740.3
TSS clone	`T`	clone	+	18839640	AT2G45740.1, AT2G45740.2, AT2G45740.3
TSS clone	`G`	clone	+	18839642	AT2G45740.1, AT2G45740.2, AT2G45740.3
TSS clone	`C`	clone	+	18839643	AT2G45740.1, AT2G45740.2, AT2G45740.3
TSS clone	`G`	clone	+	18839678	AT2G45740.1, AT2G45740.2, AT2G45740.3

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCTCTCTCTCT + 18839660 18839671 AT2G45740.1, AT2G45740.2, AT2G45740.3

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCTCTCTCTCT`	+	18839660	18839671	AT2G45740.1, AT2G45740.2, AT2G45740.3
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ATCCACGTGGAA + 18839348 18839359 AT2G45740.1, AT2G45740.2, AT2G45740.3

AtREG547 ATCCACGT     ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG408 TCCACGTGGA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG627     ACGTGGAA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG GTGCCACGTGGT + 18839386 18839397 AT2G45740.1, AT2G45740.2, AT2G45740.3

AtREG444 GTGCCACG     PPDB Motif PLACE Motif GCCAC

AtREG379 TGCCACGT    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG367   GCCACGTG   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC

AtREG544     CACGTGGT ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG AACGACGT + 18839537 18839544 AT2G45740.1, AT2G45740.2, AT2G45740.3

AtREG493 AACGACGT PPDB Motif ACGT PLACE Motif ACGT

REG AAGCCCTA + 18839582 18839589 AT2G45740.1, AT2G45740.2, AT2G45740.3

AtREG651 AAGCCCTA PPDB Motif PLACE Motif