PlantPromoterDB promoter information of AT2G45960
Summary of Gene (AT2G45960)
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Overview
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Focused view (chromosome 2: 18909450-18910649)
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Genome position
from initiation codon AT2G45960.2 AT2G45960.3 TSS from cDNA TSS information AT2G45960 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G45960
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | + | 18910231 | -219 |
| TSS peak | A | 1301 | + | 18910392 | -58 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 18910341 | -109 |
| TSS clone | C | clone | + | 18910368 | -82 |
| TSS clone | C | clone | + | 18910371 | -79 |
| TSS clone | G | clone | + | 18910390 | -60 |
| TSS clone | C | clone | + | 18910391 | -59 |
| TSS clone | A | clone | + | 18910392 | -58 |
| TSS clone | A | clone | + | 18910393 | -57 |
| TSS clone | C | clone | + | 18910394 | -56 |
| TSS clone | C | clone | + | 18910396 | -54 |
| TSS clone | A | clone | + | 18910397 | -53 |
| TSS clone | T | clone | + | 18910398 | -52 |
| TSS clone | A | clone | + | 18910400 | -50 |
| TSS clone | C | clone | + | 18910405 | -45 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CACTATAAAAA | + | 18910356 | 18910366 | -94 | -84 |
| Y Patch | CTCTCTCT | + | 18910374 | 18910381 | -76 | -69 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTTAACCGG | + | 18909999 | 18910007 | -451 | -443 | |||
| AtREG605 | CTTAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG501 | TTAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||