PlantPromoterDB promoter information of AT2G46505
Summary of Gene (AT2G46505)
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Overview
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Focused view (chromosome 2: 19091468-19090269)
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Genome position
from initiation codon AT2G46510.1 TSS from cDNA TSS information AT2G46505 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G46505
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 51 | - | 19090537 | -69 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 19090546 | -78 |
| TSS clone | A | clone | - | 19090535 | -67 |
| TSS clone | T | clone | - | 19090534 | -66 |
| TSS clone | C | clone | - | 19090503 | -35 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCCTTCTC | - | 19090493 | 19090500 | -25 | -32 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAAGCCCAGTATAAAGCCCAACT | - | 19090590 | 19090613 | -122 | -145 | |||
| AtREG409 | AAAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG376 | AAAGCCCA AAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG434 | GCCCAGTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG601 | ATAAAGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG365 | TAAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG407 | AAGCCCAA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG574 | AGCCCAAC | PPDB Motif | GCCCA, CCAACGG | PLACE Motif | TGGGCY | ||||
| AtREG607 | GCCCAACT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GTTTGGGCTTC | - | 19090625 | 19090635 | -157 | -167 | |||
| AtREG474 | GTTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG469 | TTTGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG407 | TTGGGCTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG476 | TGGGCTTC | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||