PlantPromoterDB promoter information of AT2G46650
Summary of Gene (AT2G46650)
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Overview
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Focused view (chromosome 2: 19150807-19152006)
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Genome position
from initiation codon AT2G46640.2 AT2G46650.1 TSS from cDNA TSS information AT2G46650 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G46650
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 17 | + | 19151653 | -154 |
| TSS peak | A | 4 | + | 19151785 | -22 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 19151654 | -153 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CAATATAAACA | + | 19151616 | 19151626 | -191 | -181 |
| TATA Box | TCTCTATATAAAG | + | 19151745 | 19151757 | -62 | -50 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGCGTGT | + | 19151629 | 19151636 | -178 | -171 | |||
| AtREG536 | ACGCGTGT | ABA, Drought | PPDB Motif | PLACE Motif | ACACNNG | ||||
| REG | TCGGTTCG | + | 19151667 | 19151674 | -140 | -133 | |||
| AtREG575 | TCGGTTCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||