PlantPromoterDB promoter information of AT2G46800.2
Summary of Gene (AT2G46800.2)
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Overview
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Focused view (chromosome 2: 19237128-19238327)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G46800.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G46800.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 8 | + | 19237446 | -682 |
| TSS peak | A | 13 | + | 19237563 | -565 |
| TSS peak | G | 2 | + | 19237861 | -267 |
| TSS peak | A | 5 | + | 19237964 | -164 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 19237520 | -608 |
| TSS clone | T | clone | + | 19237525 | -603 |
| TSS clone | G | clone | + | 19238008 | -120 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTTATATA | + | 19237531 | 19237538 | -597 | -590 |
| Y Patch | TCTCTCAT | + | 19237451 | 19237458 | -677 | -670 |
| Y Patch | TCTCTTCCT | + | 19237573 | 19237581 | -555 | -547 |
| Y Patch | CCTTCTCTTCCTCTC | + | 19237589 | 19237603 | -539 | -525 |
| Y Patch | TTCCTCCT | + | 19237867 | 19237874 | -261 | -254 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTAAACCG | + | 19237181 | 19237188 | -947 | -940 | |||
| AtREG511 | CTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | AAAAAGCC | + | 19237219 | 19237226 | -909 | -902 | |||
| AtREG589 | AAAAAGCC | PPDB Motif | PLACE Motif | ||||||
| REG | ACCGGTTTG | + | 19237258 | 19237266 | -870 | -862 | |||
| AtREG436 | ACCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG496 | CCGGTTTG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | AAAACGGCCACGTGTT | + | 19237342 | 19237357 | -786 | -771 | |||
| AtREG531 | AAAACGGC | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG367 | GCCACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | |||
| AtREG382 | CCACGTGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG590 | CACGTGTT | ABA, JA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| REG | GGGACCCA | + | 19237425 | 19237432 | -703 | -696 | |||
| AtREG615 | GGGACCCA | ABA | PPDB Motif | GGGACCC | PLACE Motif | ||||
| REG | GGGTCAAA | + | 19237777 | 19237784 | -351 | -344 | |||
| AtREG592 | GGGTCAAA | PPDB Motif | PLACE Motif | TTGAC, TTGACC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||