PlantPromoterDB promoter information of AT2G46820
Summary of Gene (AT2G46820)
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Overview
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Focused view (chromosome 2: 19242729-19243928)
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Genome position
from initiation codon AT2G46820.2 TSS from cDNA TSS information AT2G46820 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G46820
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 54 | + | 19243592 | -137 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 19243496 | -233 |
| TSS clone | A | clone | + | 19243592 | -137 |
| TSS clone | A | clone | + | 19243593 | -136 |
| TSS clone | G | clone | + | 19243596 | -133 |
| TSS clone | T | clone | + | 19243605 | -124 |
| TSS clone | C | clone | + | 19243611 | -118 |
| TSS clone | A | clone | + | 19243631 | -98 |
| TSS clone | T | clone | + | 19243641 | -88 |
| TSS clone | T | clone | + | 19243645 | -84 |
| TSS clone | C | clone | + | 19243650 | -79 |
| TSS clone | A | clone | + | 19243657 | -72 |
| TSS clone | T | clone | + | 19243673 | -56 |
| TSS clone | T | clone | + | 19243677 | -52 |
| TSS clone | T | clone | + | 19243679 | -50 |
| TSS clone | T | clone | + | 19243690 | -39 |
| TSS clone | T | clone | + | 19243696 | -33 |
| TSS clone | A | clone | + | 19243698 | -31 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCGCCACGTCAGC | + | 19243527 | 19243539 | -202 | -190 | |||
| AtREG560 | CCGCCACG | ABA | PPDB Motif | CCGAC | PLACE Motif | GCCAC | |||
| AtREG371 | CGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG388 | GCCACGTC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| AtREG419 | CCACGTCA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
| AtREG440 | CACGTCAG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG515 | ACGTCAGC | SA | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||