PlantPromoterDB promoter information of AT2G47400
Summary of Gene (AT2G47400)
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Overview
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Focused view (chromosome 2: 19445889-19447088)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G47400 5'->3' (+) Promoter sequence AT2G47390.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G47400
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 46 | + | 19446857 | -32 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 19446816 | -73 |
| TSS clone | T | clone | + | 19446838 | -51 |
| TSS clone | A | clone | + | 19446841 | -48 |
| TSS clone | T | clone | + | 19446842 | -47 |
| TSS clone | T | clone | + | 19446844 | -45 |
| TSS clone | C | clone | + | 19446850 | -39 |
| TSS clone | T | clone | + | 19446852 | -37 |
| TSS clone | A | clone | + | 19446857 | -32 |
| TSS clone | A | clone | + | 19446858 | -31 |
| TSS clone | C | clone | + | 19446860 | -29 |
| TSS clone | T | clone | + | 19446869 | -20 |
| TSS clone | C | clone | + | 19446871 | -18 |
| TSS clone | T | clone | + | 19446873 | -16 |
| TSS clone | A | clone | + | 19446886 | -3 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCTTC | + | 19446833 | 19446840 | -56 | -49 |
| Y Patch | TTCTCCTCC | + | 19446863 | 19446871 | -26 | -18 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTACACGTGGCAA | + | 19446749 | 19446761 | -140 | -128 | |||
| AtREG562 | GTACACGT | ABA, Auxin | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG453 | TACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
| AtREG382 | ACACGTGG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG367 | CACGTGGC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | |||
| AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG452 | CGTGGCAA | PPDB Motif | PLACE Motif | GCCAC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | - | 19446365 | AT2G47390.1 |
| TSS clone peak | A | clone | - | 19446331 | AT2G47390.1 |
| TSS clone | A | clone | - | 19446258 | AT2G47390.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||