Summary of Gene (AT2G47540.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT2G47540.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCCAATTG | + | 19505219 | 19505226 | -682 | -675 | |||
AtREG647 | CCCAATTG | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCCATTAG | + | 19505302 | 19505309 | -599 | -592 | |||
AtREG558 | CCCATTAG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 4 | + | 19517173 | AT2G47580.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 19517187 | AT2G47580.1 |
TSS clone | A | clone | + | 19517191 | AT2G47580.1 |
TSS clone | T | clone | + | 19517192 | AT2G47580.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCTCC | + | 19517192 | 19517199 | AT2G47580.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TGATGGGCTAA | + | 19517056 | 19517066 | AT2G47580.1 | ||||
AtREG635 | TGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG581 | ATGGGCTA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG571 | TGGGCTAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | ATCGGCCCACTA | + | 19517075 | 19517086 | AT2G47580.1 | ||||
AtREG555 | ATCGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG393 | TCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG532 | GCCCACTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ATATTGGGCTAA | + | 19517093 | 19517104 | AT2G47580.1 | ||||
AtREG509 | ATATTGGG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG355 | TATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG402 | ATTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG571 | TGGGCTAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | TGATGGGCTTATTAGGGCTTTA | + | 19517106 | 19517127 | AT2G47580.1 | ||||
AtREG635 | TGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG378 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG426 | TGGGCTTA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG462 | GGGCTTAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG651 | TAGGGCTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG365 | GGGCTTTA | PPDB Motif | GCCCA  | PLACE Motif |   |