PlantPromoterDB promoter information of AT2G48100.4

Summary of Gene (AT2G48100.4)

Organism	Arabidopsis thaliana
Chromosome	2
Locus	AT2G48100 TAIR NCBI
Gene model	AT2G48100.4
Description	exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: exonuclease family protein (TAIR:AT5G40310.1); Has 1165 Blast hits to 1165 proteins in 166 species: Archae - 0; Bacteria - 10; Metazoa - 634; Fungi - 294; Plants - 142; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).

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Overview

Focused view (chromosome 2: 19670245-19671444)

`Genome position from initiation codon` `AT2G48100.1 AT2G48100.2 AT2G48100.3 TSS from cDNA TSS information AT2G48100.4 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT2G48100.4

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 21 + 19670554 -691

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	21	+	19670554	-691

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone + 19670501 -744

TSS clone C clone + 19670502 -743

TSS clone A clone + 19670555 -690

TSS clone C clone + 19670561 -684

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	+	19670501	-744
TSS clone	`C`	clone	+	19670502	-743
TSS clone	`A`	clone	+	19670555	-690
TSS clone	`C`	clone	+	19670561	-684

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box AATATAAAAC + 19670522 19670531 -723 -714

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`AATATAAAAC`	+	19670522	19670531	-723	-714
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AACCCGGTTTT + 19670330 19670340 -915 -905

AtREG516 AACCCGGT    PPDB Motif PLACE Motif

AtREG455 ACCCGGTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG542    CCGGTTTT PPDB Motif AACCG(G/A) PLACE Motif

REG CGGGTCCGGTTTT + 19670355 19670367 -890 -878

AtREG491 CGGGTCCG      PPDB Motif PLACE Motif

AtREG573    GTCCGGTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG521     TCCGGTTT PPDB Motif AACCG(G/A) PLACE Motif

AtREG542      CCGGTTTT PPDB Motif AACCG(G/A) PLACE Motif

REG GGCCTAAA + 19670423 19670430 -822 -815

AtREG430 GGCCTAAA PPDB Motif PLACE Motif

REG AAATGGGCCTTTAA + 19670448 19670461 -797 -784

AtREG386 AAATGGGC       PPDB Motif GCCCA PLACE Motif

AtREG361 AATGGGCC      PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354   ATGGGCCT     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353    TGGGCCTT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG359     GGGCCTTT   PPDB Motif GCCCA PLACE Motif GGGCC

AtREG467      GGCCTTTA PPDB Motif PLACE Motif

AtREG639       GCCTTTAA PPDB Motif AAACG(C/G) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AACCCGGTTTT`		+	19670330	19670340	-915	-905
	AtREG516	`AACCCGGT`		PPDB Motif		PLACE Motif
	AtREG455	`ACCCGGTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG542	`CCGGTTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`CGGGTCCGGTTTT`		+	19670355	19670367	-890	-878
	AtREG491	`CGGGTCCG`		PPDB Motif		PLACE Motif
	AtREG573	`GTCCGGTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG521	`TCCGGTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG542	`CCGGTTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`GGCCTAAA`		+	19670423	19670430	-822	-815
	AtREG430	`GGCCTAAA`		PPDB Motif		PLACE Motif
REG	`AAATGGGCCTTTAA`		+	19670448	19670461	-797	-784
	AtREG386	`AAATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG361	`AATGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`ATGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG353	`TGGGCCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG359	`GGGCCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG467	`GGCCTTTA`		PPDB Motif		PLACE Motif
	AtREG639	`GCCTTTAA`		PPDB Motif	`AAACG(C/G)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None