Summary of Gene (AT3G01290)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G01290 5'->3' (-) Promoter sequence AT3G01280.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 77 | - | 89425 | -69 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TGTCTATATAAC | - | 89449 | 89460 | -93 | -104 |
Y Patch | CTTTCTTCTCTTC | - | 89426 | 89438 | -70 | -82 |
Y Patch | TCTTCTTCTT | - | 89466 | 89475 | -110 | -119 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTGACTTT | - | 89553 | 89560 | -197 | -204 | |||
AtREG632 | TTGACTTT | PPDB Motif |   | PLACE Motif | TTGAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 8 | - | 84894 | AT3G01270.1 |
TSS peak | A | 8 | + | 85649 | AT3G01280.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 85613 | AT3G01280.1 |
TSS clone | T | clone | + | 85616 | AT3G01280.1 |
TSS clone | A | clone | + | 85637 | AT3G01280.1 |
TSS clone | G | clone | + | 85638 | AT3G01280.1 |
TSS clone | T | clone | + | 85664 | AT3G01280.1 |
TSS clone | G | clone | + | 85692 | AT3G01280.1 |
TSS clone | T | clone | + | 85694 | AT3G01280.1 |
TSS clone | G | clone | - | 84894 | AT3G01270.1 |
TSS clone | A | clone | - | 84892 | AT3G01270.1 |
TSS clone | A | clone | - | 84891 | AT3G01270.1 |
TSS clone | C | clone | - | 84877 | AT3G01270.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTTCTCT | + | 85600 | 85608 | AT3G01280.1 | |
Y Patch | TCTCTCTCTCTT | + | 85651 | 85662 | AT3G01280.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TAAACGACGCCGTTTA | + | 85445 | 85460 | AT3G01280.1 | ||||
AtREG565 | TAAACGAC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG415 | AAACGACG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG439 | AACGACGC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG537 | ACGACGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG540 | GACGCCGT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG497 | ACGCCGTT | PPDB Motif | AAACG(C/G), CCAACGG  | PLACE Motif |   | ||||
AtREG524 | CGCCGTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG613 | GCCGTTTA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
REG | TTGCCACGTA | + | 85462 | 85471 | AT3G01280.1 | ||||
AtREG452 | TTGCCACG | PPDB Motif |   | PLACE Motif | GCCAC  | ||||
AtREG379 | TGCCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG413 | GCCACGTA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
REG | ATCCAACGG | + | 85556 | 85564 | AT3G01280.1 | ||||
AtREG586 | ATCCAACG | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
AtREG554 | TCCAACGG | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  |