Summary of Gene (AT3G01290)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G01290 5'->3' (-) Promoter sequence AT3G01280.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 77 | - | 89425 | -69 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TGTCTATATAAC | - | 89449 | 89460 | -93 | -104 |
Y Patch | CTTTCTTCTCTTC | - | 89426 | 89438 | -70 | -82 |
Y Patch | TCTTCTTCTT | - | 89466 | 89475 | -110 | -119 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTGACTTT | - | 89553 | 89560 | -197 | -204 | |||
AtREG632 | TTGACTTT | PPDB Motif |   | PLACE Motif | TTGAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 8 | + | 85649 | AT3G01280.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 85613 | AT3G01280.1 |
TSS clone | T | clone | + | 85616 | AT3G01280.1 |
TSS clone | A | clone | + | 85637 | AT3G01280.1 |
TSS clone | G | clone | + | 85638 | AT3G01280.1 |
TSS clone | T | clone | + | 85664 | AT3G01280.1 |
TSS clone | G | clone | + | 85692 | AT3G01280.1 |
TSS clone | T | clone | + | 85694 | AT3G01280.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTTCTCT | + | 85600 | 85608 | AT3G01280.1 | |
Y Patch | TCTCTCTCTCTT | + | 85651 | 85662 | AT3G01280.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |