PlantPromoterDB promoter information of AT3G01500
Summary of Gene (AT3G01500)
|
Overview
|
Focused view (chromosome 3: 198873-197674)
|
Genome position
from initiation codon AT3G01500.2 AT3G01500.3 AT3G01510.1 TSS from cDNA TSS information AT3G01500 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT3G01500
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 94 | - | 197891 | -18 |
| TSS peak | G | 4 | - | 196722 | 1151 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 197993 | -120 |
| TSS clone | A | clone | - | 197974 | -101 |
| TSS clone | T | clone | - | 197973 | -100 |
| TSS clone | A | clone | - | 197971 | -98 |
| TSS clone | T | clone | - | 197970 | -97 |
| TSS clone | A | clone | - | 197928 | -55 |
| TSS clone | A | clone | - | 197927 | -54 |
| TSS clone | A | clone | - | 197924 | -51 |
| TSS clone | T | clone | - | 197923 | -50 |
| TSS clone | A | clone | - | 197914 | -41 |
| TSS clone | T | clone | - | 197913 | -40 |
| TSS clone | G | clone | - | 197891 | -18 |
| TSS clone | C | clone | - | 197890 | -17 |
| TSS clone | C | clone | - | 197880 | -7 |
| TSS clone | A | clone | - | 196751 | 1122 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ACTATAAATA | - | 197918 | 197927 | -45 | -54 |
| Y Patch | TTTCTTCT | - | 196753 | 196760 | 1120 | 1113 |
| Y Patch | TCCTCTCTCC | - | 197853 | 197862 | 20 | 11 |
| Y Patch | CTTCTCTTC | - | 197882 | 197890 | -9 | -17 |
| Y Patch | CTCTCTCT | - | 197899 | 197906 | -26 | -33 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TAATTACG | - | 196791 | 196798 | 1082 | 1075 | |||
| AtREG646 | TAATTACG | ABA | PPDB Motif | PLACE Motif | |||||
| REG | ACACGTCAT | - | 196814 | 196822 | 1059 | 1051 | |||
| AtREG517 | ACACGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG483 | CACGTCAT | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| REG | CCCATTAT | - | 197970 | 197977 | -97 | -104 | |||
| AtREG546 | CCCATTAT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||