PlantPromoterDB promoter information of AT3G01810.1

Summary of Gene (AT3G01810.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G01810 TAIR NCBI
Gene model	AT3G01810.1
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1293 Blast hits to 384 proteins in 97 species: Archae - 2; Bacteria - 96; Metazoa - 212; Fungi - 99; Plants - 59; Viruses - 0; Other Eukaryotes - 825 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 295518-296717)

`Genome position from initiation codon` `AT3G01830.1 AT3G01830.2 TSS from cDNA TSS information AT3G01810.1 5'->3' (+) Promoter sequence AT3G01840.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G01810.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 2 + 288597 -621

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	2	+	288597	-621

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AAGCGCGT + 288382 288389 -836 -829

AtREG492 AAGCGCGT PPDB Motif ACGCGC PLACE Motif

REG CGCCGTTT + 288436 288443 -782 -775

AtREG524 CGCCGTTT PPDB Motif AAACG(C/G) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AAGCGCGT`		+	288382	288389	-836	-829
	AtREG492	`AAGCGCGT`		PPDB Motif	`ACGCGC`	PLACE Motif
REG	`CGCCGTTT`		+	288436	288443	-782	-775
	AtREG524	`CGCCGTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 4 + 296060 AT3G01830.1, AT3G01830.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	4	+	296060	AT3G01830.1, AT3G01830.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 296062 AT3G01830.1, AT3G01830.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	296062	AT3G01830.1, AT3G01830.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box CTTCTATATATT + 296020 296031 AT3G01830.1, AT3G01830.2

Y Patch TCTTCTTC + 296095 296102 AT3G01830.1, AT3G01830.2

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`CTTCTATATATT`	+	296020	296031	AT3G01830.1, AT3G01830.2
Y Patch	`TCTTCTTC`	+	296095	296102	AT3G01830.1, AT3G01830.2
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GTGGCAAT - 295512 295519 AT3G01820.1

AtREG654 GTGGCAAT PPDB Motif PLACE Motif GCCAC

REG GTGGCAAT - 295543 295550 AT3G01820.1

AtREG654 GTGGCAAT PPDB Motif PLACE Motif GCCAC

REG GTTTGGGCCTTAT - 295631 295643 AT3G01820.1

AtREG474 GTTTGGGC      PPDB Motif GCCCA PLACE Motif

AtREG373 TTTGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356   TTGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353    TGGGCCTT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG351     GGGCCTTA PPDB Motif GCCCA PLACE Motif GGGCC

AtREG425      GGCCTTAT PPDB Motif AACCG(G/A) PLACE Motif

REG TGGGCTAA - 295649 295656 AT3G01820.1

AtREG571 TGGGCTAA PPDB Motif GCCCA PLACE Motif TGGGCY

REG TGGGCCAA - 295660 295667 AT3G01820.1

AtREG484 TGGGCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY