Summary of Gene (AT3G01810.1)
|
Overview |
Genome position
from initiation codon AT3G01830.2 TSS from cDNA TSS information AT3G01810.1 5'->3' (+) Promoter sequence AT3G01840.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 2 | + | 288597 | -621 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAGCGCGT | + | 288382 | 288389 | -836 | -829 | |||
AtREG492 | AAGCGCGT | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | CGCCGTTT | + | 288436 | 288443 | -782 | -775 | |||
AtREG524 | CGCCGTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | + | 296060 | AT3G01830.1, AT3G01830.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 296062 | AT3G01830.1, AT3G01830.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTTCTATATATT | + | 296020 | 296031 | AT3G01830.1, AT3G01830.2 | |
Y Patch | TCTTCTTC | + | 296095 | 296102 | AT3G01830.1, AT3G01830.2 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GTGGCAAT | - | 295512 | 295519 | AT3G01820.1 | ||||
AtREG654 | GTGGCAAT | PPDB Motif |   | PLACE Motif | GCCAC  | ||||
REG | GTGGCAAT | - | 295543 | 295550 | AT3G01820.1 | ||||
AtREG654 | GTGGCAAT | PPDB Motif |   | PLACE Motif | GCCAC  | ||||
REG | GTTTGGGCCTTAT | - | 295631 | 295643 | AT3G01820.1 | ||||
AtREG474 | GTTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG373 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | TTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG353 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG351 | GGGCCTTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG425 | GGCCTTAT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TGGGCTAA | - | 295649 | 295656 | AT3G01820.1 | ||||
AtREG571 | TGGGCTAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | TGGGCCAA | - | 295660 | 295667 | AT3G01820.1 | ||||
AtREG484 | TGGGCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  |