PlantPromoterDB promoter information of AT3G01810.1

Summary of Gene (AT3G01810.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G01810 TAIR NCBI
Gene model	AT3G01810.1
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1293 Blast hits to 384 proteins in 97 species: Archae - 2; Bacteria - 96; Metazoa - 212; Fungi - 99; Plants - 59; Viruses - 0; Other Eukaryotes - 825 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 301718-302917)

`Genome position from initiation codon` `AT3G01860.1 TSS from cDNA TSS information AT3G01810.1 5'->3' (+) Promoter sequence AT3G01850.1 AT3G01850.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G01810.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 2 + 288597 -621

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	2	+	288597	-621

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AAGCGCGT + 288382 288389 -836 -829

AtREG492 AAGCGCGT PPDB Motif ACGCGC PLACE Motif

REG CGCCGTTT + 288436 288443 -782 -775

AtREG524 CGCCGTTT PPDB Motif AAACG(C/G) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AAGCGCGT`		+	288382	288389	-836	-829
	AtREG492	`AAGCGCGT`		PPDB Motif	`ACGCGC`	PLACE Motif
REG	`CGCCGTTT`		+	288436	288443	-782	-775
	AtREG524	`CGCCGTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 8 - 302037 AT3G01850.1, AT3G01850.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	8	-	302037	AT3G01850.1, AT3G01850.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak T clone + 302698 AT3G01860.1

TSS clone A clone - 302037 AT3G01850.1, AT3G01850.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`T`	clone	+	302698	AT3G01860.1
TSS clone	`A`	clone	-	302037	AT3G01850.1, AT3G01850.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCTCTCTCTTTCCTCTC + 302734 302751 AT3G01860.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCTCTCTCTTTCCTCTC`	+	302734	302751	AT3G01860.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ATGCCACGTCATC - 302082 302094 AT3G01850.1, AT3G01850.2

AtREG448 ATGCCACG      ABA, DREB1Aox PPDB Motif PLACE Motif GCCAC

AtREG379 TGCCACGT     ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG388   GCCACGTC    PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG419    CCACGTCA   PPDB Motif ACGT PLACE Motif ACGT, ACGTG, TGACGTGG, CCACGTCA

AtREG483     CACGTCAT PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG578      ACGTCATC ABA PPDB Motif ACGT PLACE Motif ACGT

REG CCACGTCA - 302107 302114 AT3G01850.1, AT3G01850.2

AtREG419 CCACGTCA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, TGACGTGG, CCACGTCA

REG TAAATGGGTCGGGTCG - 302233 302248 AT3G01850.1, AT3G01850.2

AtREG443 TAAATGGG         PPDB Motif GCCCA PLACE Motif

AtREG442      GGGTCGGG    PPDB Motif CCGAC PLACE Motif CCGAC

AtREG405       GGTCGGGT   PPDB Motif CCGAC PLACE Motif CCGAC

AtREG390        GTCGGGTC PPDB Motif CCGAC, GGGACCC PLACE Motif CCGAC

AtREG383         TCGGGTCG PPDB Motif PLACE Motif

REG CAATTGGGCCAA - 302266 302277 AT3G01850.1, AT3G01850.2

AtREG647 CAATTGGG     PPDB Motif PLACE Motif

AtREG418 AATTGGGC    PPDB Motif GCCCA PLACE Motif

AtREG352   ATTGGGCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG420    TTGGGCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG484     TGGGCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG CCAATAAG + 302607 302614 AT3G01860.1

AtREG611 CCAATAAG PPDB Motif PLACE Motif