PlantPromoterDB promoter information of AT3G01810.2

Summary of Gene (AT3G01810.2)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G01810 TAIR NCBI
Gene model	AT3G01810.2
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1293 Blast hits to 384 proteins in 97 species: Archae - 2; Bacteria - 96; Metazoa - 212; Fungi - 99; Plants - 59; Viruses - 0; Other Eukaryotes - 825 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 277868-279067)

`Genome position from initiation codon` `AT3G01780.1 TSS from cDNA TSS information AT3G01810.2 5'->3' (+) Promoter sequence AT3G01770.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G01810.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 2 + 288597 -621

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	2	+	288597	-621

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AAGCGCGT + 288382 288389 -836 -829

AtREG492 AAGCGCGT PPDB Motif ACGCGC PLACE Motif

REG CGCCGTTT + 288436 288443 -782 -775

AtREG524 CGCCGTTT PPDB Motif AAACG(C/G) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AAGCGCGT`		+	288382	288389	-836	-829
	AtREG492	`AAGCGCGT`		PPDB Motif	`ACGCGC`	PLACE Motif
REG	`CGCCGTTT`		+	288436	288443	-782	-775
	AtREG524	`CGCCGTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak G clone + 279060 AT3G01780.1

TSS clone T clone - 278785 AT3G01770.1

TSS clone G clone - 278782 AT3G01770.1

TSS clone peak G clone - 278780 AT3G01770.1

TSS clone C clone - 278778 AT3G01770.1

TSS clone G clone - 278776 AT3G01770.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`G`	clone	+	279060	AT3G01780.1
TSS clone	`T`	clone	-	278785	AT3G01770.1
TSS clone	`G`	clone	-	278782	AT3G01770.1
TSS clone peak	`G`	clone	-	278780	AT3G01770.1
TSS clone	`C`	clone	-	278778	AT3G01770.1
TSS clone	`G`	clone	-	278776	AT3G01770.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ACGCCGTTTT + 278801 278810 AT3G01780.1

AtREG497 ACGCCGTT   PPDB Motif AAACG(C/G), CCAACGG PLACE Motif

AtREG524 CGCCGTTT PPDB Motif AAACG(C/G) PLACE Motif

AtREG531   GCCGTTTT PPDB Motif AAACG(C/G) PLACE Motif

REG TACTGGGC + 278813 278820 AT3G01780.1

AtREG434 TACTGGGC PPDB Motif GCCCA PLACE Motif

REG TGGGCTTAT + 278901 278909 AT3G01780.1

AtREG426 TGGGCTTA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG462 GGGCTTAT PPDB Motif GCCCA PLACE Motif

REG TAAAGCCCAATG + 278914 278925 AT3G01780.1

AtREG365 TAAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG376 AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402    AGCCCAAT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG461     GCCCAATG PPDB Motif GCCCA PLACE Motif

REG TTATTGGG + 278943 278950 AT3G01780.1

AtREG417 TTATTGGG PPDB Motif GCCCA PLACE Motif

REG ACGGCACG + 278968 278975 AT3G01780.1

AtREG522 ACGGCACG PPDB Motif PLACE Motif

REG ACGGCACGCGCTT + 278999 279011 AT3G01780.1

AtREG522 ACGGCACG      PPDB Motif PLACE Motif

AtREG381     CACGCGCT PPDB Motif ACGCGC PLACE Motif

AtREG492      ACGCGCTT PPDB Motif ACGCGC PLACE Motif

REG ATAAGCCCA - 278901 278909 AT3G01770.1

AtREG462 ATAAGCCC PPDB Motif GCCCA PLACE Motif

AtREG426 TAAGCCCA PPDB Motif GCCCA PLACE Motif TGGGCY

REG CATTGGGCTTTA - 278914 278925 AT3G01770.1

AtREG461 CATTGGGC     PPDB Motif GCCCA PLACE Motif

AtREG402 ATTGGGCT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   TTGGGCTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376    TGGGCTTT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG365     GGGCTTTA PPDB Motif GCCCA PLACE Motif

REG CCCAATAA - 278943 278950 AT3G01770.1

AtREG417 CCCAATAA PPDB Motif GCCCA PLACE Motif

REG CGTGCCGT - 278968 278975 AT3G01770.1

AtREG522 CGTGCCGT PPDB Motif PLACE Motif

REG AAGCGCGTGCCGT - 278999 279011 AT3G01770.1

AtREG492 AAGCGCGT      PPDB Motif ACGCGC PLACE Motif

AtREG381 AGCGCGTG     PPDB Motif ACGCGC PLACE Motif

AtREG522      CGTGCCGT PPDB Motif PLACE Motif