Summary of Gene (AT3G01810.2)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT3G01810.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 2 | + | 288597 | -621 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAGCGCGT | + | 288382 | 288389 | -836 | -829 | |||
AtREG492 | AAGCGCGT | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | CGCCGTTT | + | 288436 | 288443 | -782 | -775 | |||
AtREG524 | CGCCGTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 4 | + | 279100 | AT3G01780.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | + | 279060 | AT3G01780.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTTCTTCTTCC | + | 279071 | 279082 | AT3G01780.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ATAAGCCCA | - | 278901 | 278909 | AT3G01770.1 | ||||
AtREG462 | ATAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG426 | TAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | CATTGGGCTTTA | - | 278914 | 278925 | AT3G01770.1 | ||||
AtREG461 | CATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG402 | ATTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | TTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG365 | GGGCTTTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCCAATAA | - | 278943 | 278950 | AT3G01770.1 | ||||
AtREG417 | CCCAATAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CGTGCCGT | - | 278968 | 278975 | AT3G01770.1 | ||||
AtREG522 | CGTGCCGT | PPDB Motif |   | PLACE Motif |   | ||||
REG | AAGCGCGTGCCGT | - | 278999 | 279011 | AT3G01770.1 | ||||
AtREG492 | AAGCGCGT | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG381 | AGCGCGTG | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG522 | CGTGCCGT | PPDB Motif |   | PLACE Motif |   | ||||
REG | TACTGGGC | + | 278813 | 278820 | AT3G01780.1 | ||||
AtREG434 | TACTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGGGCTTAT | + | 278901 | 278909 | AT3G01780.1 | ||||
AtREG426 | TGGGCTTA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG462 | GGGCTTAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TAAAGCCCAATG | + | 278914 | 278925 | AT3G01780.1 | ||||
AtREG365 | TAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG402 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG461 | GCCCAATG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TTATTGGG | + | 278943 | 278950 | AT3G01780.1 | ||||
AtREG417 | TTATTGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ACGGCACG | + | 278968 | 278975 | AT3G01780.1 | ||||
AtREG522 | ACGGCACG | PPDB Motif |   | PLACE Motif |   | ||||
REG | ACGGCACGCGCTT | + | 278999 | 279011 | AT3G01780.1 | ||||
AtREG522 | ACGGCACG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG381 | CACGCGCT | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG492 | ACGCGCTT | PPDB Motif | ACGCGC  | PLACE Motif |   |