Summary of Gene (AT3G01810.2)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G01810.2 5'->3' (+) Promoter sequence AT3G01790.1
AT3G01790.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 2 | + | 288597 | -621 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAGCGCGT | + | 288382 | 288389 | -836 | -829 | |||
AtREG492 | AAGCGCGT | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | CGCCGTTT | + | 288436 | 288443 | -782 | -775 | |||
AtREG524 | CGCCGTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | A | clone | - | 285760 | AT3G01790.1, AT3G01790.2 |
TSS clone peak | C | clone | - | 285743 | AT3G01790.1, AT3G01790.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTTTATATATG | + | 285840 | 285850 | AT3G01800.1 | |
Y Patch | CTCCCTCC | - | 285762 | 285769 | AT3G01790.1, AT3G01790.2 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AATAGCCC | - | 285799 | 285806 | AT3G01790.1, AT3G01790.2 | ||||
AtREG584 | AATAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ACCGGTTA | + | 285705 | 285712 | AT3G01800.1 | ||||
AtREG503 | ACCGGTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
REG | GGGCTATT | + | 285799 | 285806 | AT3G01800.1 | ||||
AtREG584 | GGGCTATT | PPDB Motif | GCCCA  | PLACE Motif |   |