PlantPromoterDB promoter information of AT3G01810.2

Summary of Gene (AT3G01810.2)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G01810 TAIR NCBI
Gene model	AT3G01810.2
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1293 Blast hits to 384 proteins in 97 species: Archae - 2; Bacteria - 96; Metazoa - 212; Fungi - 99; Plants - 59; Viruses - 0; Other Eukaryotes - 825 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 284918-286117)

`Genome position from initiation codon` `AT3G01800.1 TSS from cDNA TSS information AT3G01810.2 5'->3' (+) Promoter sequence AT3G01790.1 AT3G01790.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G01810.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 2 + 288597 -621

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	2	+	288597	-621

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AAGCGCGT + 288382 288389 -836 -829

AtREG492 AAGCGCGT PPDB Motif ACGCGC PLACE Motif

REG CGCCGTTT + 288436 288443 -782 -775

AtREG524 CGCCGTTT PPDB Motif AAACG(C/G) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AAGCGCGT`		+	288382	288389	-836	-829
	AtREG492	`AAGCGCGT`		PPDB Motif	`ACGCGC`	PLACE Motif
REG	`CGCCGTTT`		+	288436	288443	-782	-775
	AtREG524	`CGCCGTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak A clone - 285760 AT3G01790.1, AT3G01790.2

TSS clone peak C clone - 285743 AT3G01790.1, AT3G01790.2

TSS clone T clone + 285872 AT3G01800.1

TSS clone peak C clone + 285875 AT3G01800.1

TSS clone C clone + 285919 AT3G01800.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`A`	clone	-	285760	AT3G01790.1, AT3G01790.2
TSS clone peak	`C`	clone	-	285743	AT3G01790.1, AT3G01790.2
TSS clone	`T`	clone	+	285872	AT3G01800.1
TSS clone peak	`C`	clone	+	285875	AT3G01800.1
TSS clone	`C`	clone	+	285919	AT3G01800.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box CTTTATATATG + 285840 285850 AT3G01800.1

Y Patch CTCCCTCC - 285762 285769 AT3G01790.1, AT3G01790.2

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`CTTTATATATG`	+	285840	285850	AT3G01800.1
Y Patch	`CTCCCTCC`	-	285762	285769	AT3G01790.1, AT3G01790.2
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG AATAGCCC - 285799 285806 AT3G01790.1, AT3G01790.2

AtREG584 AATAGCCC PPDB Motif GCCCA PLACE Motif

REG ACCGGTTA + 285705 285712 AT3G01800.1

AtREG503 ACCGGTTA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG GGGCTATT + 285799 285806 AT3G01800.1

AtREG584 GGGCTATT PPDB Motif GCCCA PLACE Motif