PlantPromoterDB promoter information of AT3G01820.1

Summary of Gene (AT3G01820.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G01820 TAIR NCBI
Gene model	AT3G01820.1
Description	adenylate kinase family protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: ADK (ADENOSINE KINASE); adenylate kinase/ nucleotide kinase (TAIR:AT2G37250.1); Has 6349 Blast hits to 6292 proteins in 1637 species: Archae - 58; Bacteria - 3459; Metazoa - 744; Fungi - 256; Plants - 228; Viruses - 0; Other Eukaryotes - 1604 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 296357-295158)

`Genome position from initiation codon` `TSS from cDNA TSS information AT3G01820.1 5'->3' (-) Promoter sequence AT3G01830.1 AT3G01830.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G01820.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 4 - 295458 -101

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	4	-	295458	-101

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 295475 -118

TSS clone C clone - 295459 -102

TSS clone G clone - 295457 -100

TSS clone C clone - 295451 -94

TSS clone T clone - 295433 -76

TSS clone T clone - 295429 -72

TSS clone T clone - 295408 -51

TSS clone T clone - 295399 -42

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	295475	-118
TSS clone	`C`	clone	-	295459	-102
TSS clone	`G`	clone	-	295457	-100
TSS clone	`C`	clone	-	295451	-94
TSS clone	`T`	clone	-	295433	-76
TSS clone	`T`	clone	-	295429	-72
TSS clone	`T`	clone	-	295408	-51
TSS clone	`T`	clone	-	295399	-42

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCTCTCTCTTTCT - 295410 295423 -53 -66

Y Patch CCCTCTCTTT - 295427 295436 -70 -79

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCTCTCTCTTTCT`	-	295410	295423	-53	-66
Y Patch	`CCCTCTCTTT`	-	295427	295436	-70	-79
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GTGGCAAT - 295512 295519 -155 -162

AtREG654 GTGGCAAT PPDB Motif PLACE Motif GCCAC

REG GTGGCAAT - 295543 295550 -186 -193

AtREG654 GTGGCAAT PPDB Motif PLACE Motif GCCAC

REG GTTTGGGCCTTAT - 295631 295643 -274 -286

AtREG474 GTTTGGGC      PPDB Motif GCCCA PLACE Motif

AtREG373 TTTGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356   TTGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353    TGGGCCTT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG351     GGGCCTTA PPDB Motif GCCCA PLACE Motif GGGCC

AtREG425      GGCCTTAT PPDB Motif AACCG(G/A) PLACE Motif

REG TGGGCTAA - 295649 295656 -292 -299

AtREG571 TGGGCTAA PPDB Motif GCCCA PLACE Motif TGGGCY

REG TGGGCCAA - 295660 295667 -303 -310

AtREG484 TGGGCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GTGGCAAT`		-	295512	295519	-155	-162
	AtREG654	`GTGGCAAT`		PPDB Motif		PLACE Motif	`GCCAC`
REG	`GTGGCAAT`		-	295543	295550	-186	-193
	AtREG654	`GTGGCAAT`		PPDB Motif		PLACE Motif	`GCCAC`
REG	`GTTTGGGCCTTAT`		-	295631	295643	-274	-286
	AtREG474	`GTTTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG373	`TTTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`TTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG353	`TGGGCCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG351	`GGGCCTTA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG425	`GGCCTTAT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TGGGCTAA`		-	295649	295656	-292	-299
	AtREG571	`TGGGCTAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
REG	`TGGGCCAA`		-	295660	295667	-303	-310
	AtREG484	`TGGGCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 4 + 296060 AT3G01830.1, AT3G01830.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	4	+	296060	AT3G01830.1, AT3G01830.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 296062 AT3G01830.1, AT3G01830.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	296062	AT3G01830.1, AT3G01830.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box CTTCTATATATT + 296020 296031 AT3G01830.1, AT3G01830.2

Y Patch TCTTCTTC + 296095 296102 AT3G01830.1, AT3G01830.2

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`CTTCTATATATT`	+	296020	296031	AT3G01830.1, AT3G01830.2
Y Patch	`TCTTCTTC`	+	296095	296102	AT3G01830.1, AT3G01830.2
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None